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Transcript: MGP_C57BL6NJ_T0050201.1

Description

synaptopodin [Source:MGI Symbol;Acc:MGI:1099446]

Gene Synonyms

9030217H17Rik, 9130229N11, 9330140I15Rik, AW046661, Kiaa1029

Location

Chromosome 18: 62,070,685-62,100,994 reverse strand.

Reference strain equivalent

Synpo

About this transcript

This transcript has 3 exons, is annotated with 29 domains and features and maps to 210 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0024878.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_C57BL6NJ_T0050203.1-51591100aaMGP_C57BL6NJ_P0050203
 
Protein coding
-Ensembl Canonical
MGP_C57BL6NJ_T0050201.1-5060901aaMGP_C57BL6NJ_P0050201
 
Protein coding
CCDS37833, CCDS50298E0CYK1 E9Q3E2 Q3U336
Q3URF1 Q8CC35 		-
MGP_C57BL6NJ_T0050207.1-5040929aaMGP_C57BL6NJ_P0050207
 
Protein coding
--
MGP_C57BL6NJ_T0050202.1-4970901aaMGP_C57BL6NJ_P0050202
 
Protein coding
--
MGP_C57BL6NJ_T0050206.1-4479690aaMGP_C57BL6NJ_P0050206
 
Protein coding
--
MGP_C57BL6NJ_T0050205.1-4442690aaMGP_C57BL6NJ_P0050205
 
Protein coding
--
MGP_C57BL6NJ_T0050208.1-47715aaMGP_C57BL6NJ_P0050208
 
Protein coding
--
MGP_C57BL6NJ_T0050204.1-2601No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0050210.1-1926No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0050211.1-642No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0050209.1-418No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0050212.1-214No protein-
 
Processed transcript
--

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 5,060 bps, Translation length: 901 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8CC35

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS37833, CCDS50298

Version

MGP_C57BL6NJ_T0050201.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.