Ensembl mirror
More ▼
Search »
Mouse C57BL/6NJ (C57BL_6NJ_v1) ▼

Favourite species

All species

Recent locations

Transcript-based displays

Configure this page

Custom tracks

Export data

Bookmark this page

Transcript: MGP_C57BL6NJ_T0042847.1

Description

collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]

Gene Synonyms

Col2, Col2a, Col2a-1, Del1, Dmm, Lpk, M100856, Rgsc856

Location

Chromosome 15: 103,346,233-103,375,456 reverse strand.

Reference strain equivalent

Col2a1

About this transcript

This transcript has 54 exons, is annotated with 61 domains and features and maps to 473 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0022693.1 Show transcript tableHide transcript table

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
MGP_C57BL6NJ_T0042847.1-51041487aaMGP_C57BL6NJ_P0042847
 
Protein coding
CCDS37189, CCDS49716D3Z7T2 P28481 Ensembl Canonical
MGP_C57BL6NJ_T0042848.1-48621419aaMGP_C57BL6NJ_P0042848
 
Protein coding
--
MGP_C57BL6NJ_T0042854.1-538132aaMGP_C57BL6NJ_P0042854
 
Protein coding
--
MGP_C57BL6NJ_T0042853.1-715No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0042852.1-626No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0042850.1-491No protein-
 
Processed transcript
--
MGP_C57BL6NJ_T0042851.1-809No protein-
 
Retained intron
--
MGP_C57BL6NJ_T0042849.1-654No protein-
 
Retained intron
--
MGP_C57BL6NJ_T0042855.1-613No protein-
 
Retained intron
--

Summary

Statistics

Exons: 54, Coding exons: 54, Transcript length: 5,104 bps, Translation length: 1,487 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28481

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS37189, CCDS49716

Version

MGP_C57BL6NJ_T0042847.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.