Transcript: MGP_C57BL6NJ_T0040311.1

Description

homeobox containing 1 [Source:MGI Symbol;Acc:MGI:2445066]

Gene Synonyms

AI451877, AI604847, F830020C16Rik

Location

Chromosome 14: 62,167,616-62,311,269 reverse strand.

Reference strain equivalent

Hmbox1

About this transcript

This transcript has 11 exons, is annotated with 24 domains and features and maps to 317 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0021878.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0040315.1	-	1729	444aa	MGP_C57BL6NJ_P0040315	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0040311.1	-	3396	404aa	MGP_C57BL6NJ_P0040311	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36955	H3BJ31 H3BK13 H3BK67 H3BKF8 H3BKM3 H3BL55 Q8BJA3	-
MGP_C57BL6NJ_T0040313.1	-	2931	419aa	MGP_C57BL6NJ_P0040313	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0040317.1	-	1771	405aa	MGP_C57BL6NJ_P0040317	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0040319.1	-	1715	416aa	MGP_C57BL6NJ_P0040319	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0040314.1	-	1586	408aa	MGP_C57BL6NJ_P0040314	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0040318.1	-	1422	364aa	MGP_C57BL6NJ_P0040318	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0040312.1	-	614	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0040320.1	-	4738	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0040316.1	-	1467	420aa	MGP_C57BL6NJ_P0040316	Unknown likely coding		-	-

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 3,396 bps, Translation length: 404 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BJA3

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS36955

Version

MGP_C57BL6NJ_T0040311.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0040311.1

Summary

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Transcript: MGP_C57BL6NJ_T0040311.1

Summary

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