Transcript: MGP_C57BL6NJ_T0037608.1

Description

PDZ and LIM domain 7 [Source:MGI Symbol;Acc:MGI:1914649]

Gene Synonyms

1110003B01Rik, 2410002J21Rik, Enigma, LMP

Location

Chromosome 13: 56,641,458-56,660,133 reverse strand.

Reference strain equivalent

Pdlim7

About this transcript

This transcript has 14 exons, is annotated with 6 domains and features and maps to 235 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0020984.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0037612.1	-	1697	457aa	MGP_C57BL6NJ_P0037612	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0037614.1	-	1915	219aa	MGP_C57BL6NJ_P0037614	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0037613.1	-	1006	222aa	MGP_C57BL6NJ_P0037613	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0037615.1	-	899	188aa	MGP_C57BL6NJ_P0037615	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0037617.1	-	457	124aa	MGP_C57BL6NJ_P0037617	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0037619.1	-	365	58aa	MGP_C57BL6NJ_P0037619	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0037608.1	-	1756	457aa	MGP_C57BL6NJ_P0037608	Nonsense mediated decay	CCDS26547, CCDS49275, CCDS49276	B8JJB1 B8JJB2 B8JJB3 Q3TJD7 Q8BVJ7	-
MGP_C57BL6NJ_T0037609.1	-	3573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0037611.1	-	1694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0037616.1	-	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0037618.1	-	396	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0037610.1	-	1074	277aa	MGP_C57BL6NJ_P0037610	Unknown likely coding		-	-

Summary

Statistics

Exons: 14, Coding exons: 12, Transcript length: 1,756 bps, Translation length: 457 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3TJD7

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS26547, CCDS49275, CCDS49276

Version

MGP_C57BL6NJ_T0037608.1

Type

Nonsense mediated decay

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0037608.1

Summary

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Transcript: MGP_C57BL6NJ_T0037608.1

Summary

About Us

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