Transcript: MGP_C57BL6NJ_T0036541.1

Description

RIKEN cDNA 4930427A07 gene [Source:MGI Symbol;Acc:MGI:2144738]

Gene Synonyms

AA536649, mFLJ00116

Location

Chromosome 12: 119,197,836-119,205,956 forward strand.

Reference strain equivalent

Tedc1

About this transcript

This transcript has 8 exons, is annotated with 15 domains and features and maps to 261 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0020560.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0036541.1	-	2441	420aa	MGP_C57BL6NJ_P0036541	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49196	A0A0G2JFZ7 A0A0G2JG54 Q3UK37	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0036543.1	-	3998	139aa	MGP_C57BL6NJ_P0036543	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0036545.1	-	584	80aa	MGP_C57BL6NJ_P0036545	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0036546.1	-	2018	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0036544.1	-	624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0036542.1	-	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,441 bps, Translation length: 420 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3UK37

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS49196

Version

MGP_C57BL6NJ_T0036541.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0036541.1

Summary

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Transcript: MGP_C57BL6NJ_T0036541.1

Summary

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