Transcript: MGP_C57BL6NJ_T0035498.1

Description

RIKEN cDNA 4930447C04 gene [Source:MGI Symbol;Acc:MGI:1923051]

Gene Synonyms

4921504I02Rik, A930035O15Rik, Six6OS, Six6as, Six6os1

Location

Chromosome 12: 75,013,809-75,056,225 reverse strand.

Reference strain equivalent

4930447C04Rik

About this transcript

This transcript has 17 exons, is annotated with 5 domains and features and maps to 181 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0020220.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0035499.1	-	1985	534aa	MGP_C57BL6NJ_P0035499	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0035504.1	-	1970	88aa	MGP_C57BL6NJ_P0035504	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0035498.1	-	1930	533aa	MGP_C57BL6NJ_P0035498	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25971	D3YUI5 D3YZ78 D3Z202 F7BAS9 F8WHJ9 Q9CTN5	-
MGP_C57BL6NJ_T0035506.1	-	793	143aa	MGP_C57BL6NJ_P0035506	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0035505.1	-	640	107aa	MGP_C57BL6NJ_P0035505	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0035503.1	-	1939	203aa	MGP_C57BL6NJ_P0035503	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0035500.1	-	503	70aa	MGP_C57BL6NJ_P0035500	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0035502.1	-	466	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0035501.1	-	790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 1,930 bps, Translation length: 533 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CTN5

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS25971

Version

MGP_C57BL6NJ_T0035498.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0035498.1

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: MGP_C57BL6NJ_T0035498.1

Summary

About Us

Get help

Our sister sites

Follow us