Transcript: MGP_C57BL6NJ_T0030837.1

Description

RPA interacting protein [Source:MGI Symbol;Acc:MGI:1916973]

Gene Synonyms

2400006N03Rik, Rip

Location

Chromosome 11: 73,713,846-73,721,466 forward strand.

Reference strain equivalent

Rpain

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features and maps to 237 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0019010.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0030837.1	-	1100	219aa	MGP_C57BL6NJ_P0030837	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24969, CCDS56790, CCDS56791, CCDS56792	J3QN46 J3QP63 Q0PL78 Q0PL79 Q0PL80 Q0PL81 Q9CWY9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0030842.1	-	566	174aa	MGP_C57BL6NJ_P0030842	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0030846.1	-	519	172aa	MGP_C57BL6NJ_P0030846	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0030843.1	-	343	106aa	MGP_C57BL6NJ_P0030843	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0030845.1	-	282	93aa	MGP_C57BL6NJ_P0030845	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0030838.1	-	759	51aa	MGP_C57BL6NJ_P0030838	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0030844.1	-	548	107aa	MGP_C57BL6NJ_P0030844	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0030847.1	-	764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0030841.1	-	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0030840.1	-	688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0030849.1	-	445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0030839.1	-	434	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0030848.1	-	421	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,100 bps, Translation length: 219 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CWY9

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS24969, CCDS56790, CCDS56791, CCDS56792

Version

MGP_C57BL6NJ_T0030837.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0030837.1

Summary

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Transcript: MGP_C57BL6NJ_T0030837.1

Summary

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