Transcript: MGP_C57BL6NJ_T0029927.1

Description

serine hydroxymethyltransferase 1 (soluble) [Source:MGI Symbol;Acc:MGI:98299]

Gene Synonyms

AI324848, AI385541, C81125, Shmt, mshmt, mshmt1, mshmt2

Location

Chromosome 11: 62,629,793-62,652,875 reverse strand.

Reference strain equivalent

Shmt1

About this transcript

This transcript has 12 exons, is annotated with 11 domains and features and maps to 407 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0018818.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0029927.1	-	2858	478aa	MGP_C57BL6NJ_P0029927	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24799	G3UYY1 G3UZ26 G3UZZ9 P50431	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0029930.1	-	1324	440aa	MGP_C57BL6NJ_P0029930	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0029929.1	-	1318	438aa	MGP_C57BL6NJ_P0029929	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0029931.1	-	1319	121aa	MGP_C57BL6NJ_P0029931	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0029928.1	-	1295	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0029937.1	-	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0029936.1	-	415	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0029935.1	-	1283	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0029932.1	-	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0029934.1	-	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0029933.1	-	453	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,858 bps, Translation length: 478 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50431

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS24799

Version

MGP_C57BL6NJ_T0029927.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0029927.1

Summary

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Transcript: MGP_C57BL6NJ_T0029927.1

Summary

About Us

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