Transcript: MGP_C57BL6NJ_T0021376.1

Description

SPHK1 interactor, AKAP domain containing [Source:MGI Symbol;Acc:MGI:1924879]

Gene Synonyms

4930544G21Rik, A930009L15Rik, AI852220, SKIP, mKIAA1678

Location

Chromosome 1: 87,484,471-87,658,814 reverse strand.

Reference strain equivalent

Sphkap

About this transcript

This transcript has 11 exons, is annotated with 16 domains and features and maps to 213 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0016616.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0021376.1	-	8154	1658aa	MGP_C57BL6NJ_P0021376	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48298	A0A0R4J1Y6 E9PUC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0021378.1	-	5888	1400aa	MGP_C57BL6NJ_P0021378	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0021379.1	-	5757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0021380.1	-	757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0021381.1	-	316	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0021377.1	-	6828	1712aa	MGP_C57BL6NJ_P0021377	Unknown likely coding		-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 8,154 bps, Translation length: 1,658 residues

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS48298

Version

MGP_C57BL6NJ_T0021376.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0021376.1

Summary

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Transcript: MGP_C57BL6NJ_T0021376.1

Summary

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