Transcript: MGP_C57BL6NJ_T0020553.1

Description

calcium response factor [Source:MGI Symbol;Acc:MGI:2182269]

Gene Synonyms

Als2cr8, ECBRC-FC1, ECBRC-FC2

Location

Chromosome 1: 62,479,019-62,534,086 forward strand.

Reference strain equivalent

Carf

About this transcript

This transcript has 18 exons, is annotated with 5 domains and features and maps to 212 oligo probes.

Gene

This transcript is a product of gene MGP_C57BL6NJ_G0016465.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0020557.1	-	5470	689aa	MGP_C57BL6NJ_P0020557	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0020558.1	-	2157	689aa	MGP_C57BL6NJ_P0020558	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0020560.1	-	2102	654aa	MGP_C57BL6NJ_P0020560	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0020555.1	-	410	79aa	MGP_C57BL6NJ_P0020555	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0020553.1	-	2763	87aa	MGP_C57BL6NJ_P0020553	Nonsense mediated decay	CCDS14989, CCDS78592	A0A087WPQ8 A8VI08 A8VI09 D3Z2W4 M0QWJ8 Q8VHI4	-
MGP_C57BL6NJ_T0020559.1	-	1837	255aa	MGP_C57BL6NJ_P0020559	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0020562.1	-	493	54aa	MGP_C57BL6NJ_P0020562	Nonsense mediated decay		-	-
MGP_C57BL6NJ_T0020554.1	-	3795	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0020556.1	-	3213	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0020561.1	-	2418	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 18, Coding exons: 4, Transcript length: 2,763 bps, Translation length: 87 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VHI4

CCDS

This transcript is a member of the Mouse C57BL/6NJ CCDS set: CCDS14989, CCDS78592

Version

MGP_C57BL6NJ_T0020553.1

Type

Nonsense mediated decay

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C57BL6NJ_T0020553.1

Summary

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Transcript: MGP_C57BL6NJ_T0020553.1

Summary

About Us

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