Transcript: MGP_C3HHeJ_T0028821.1

Description

interferon regulatory factor 1 [Source:MGI Symbol;Acc:MGI:96590]

Gene Synonyms

AU020929, Irf-1

Location

Chromosome 11: 52,825,546-52,832,854 forward strand.

Reference strain equivalent

Irf1

About this transcript

This transcript has 10 exons, is annotated with 24 domains and features and maps to 241 oligo probes.

Gene

This transcript is a product of gene MGP_C3HHeJ_G0018055.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C3HHeJ_T0028821.1	-	2136	329aa	MGP_C3HHeJ_P0028821	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24686, CCDS48796	A8Y5B9 D6RH71 P15314 Q3U5M1 Q5SX13 Q5SX14 Q5SX15 Q5SX16	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C3HHeJ_T0028823.1	-	2091	304aa	MGP_C3HHeJ_P0028823	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0028828.1	-	2069	329aa	MGP_C3HHeJ_P0028828	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0028822.1	-	832	199aa	MGP_C3HHeJ_P0028822	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0028827.1	-	823	182aa	MGP_C3HHeJ_P0028827	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0028826.1	-	525	62aa	MGP_C3HHeJ_P0028826	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0028829.1	-	515	132aa	MGP_C3HHeJ_P0028829	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0028825.1	-	516	51aa	MGP_C3HHeJ_P0028825	Nonsense mediated decay		-	-
MGP_C3HHeJ_T0028824.1	-	942	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C3HHeJ_T0028831.1	-	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,136 bps, Translation length: 329 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P15314

CCDS

This transcript is a member of the Mouse C3H/HeJ CCDS set: CCDS24686, CCDS48796

Version

MGP_C3HHeJ_T0028821.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C3HHeJ_T0028821.1

Summary

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Transcript: MGP_C3HHeJ_T0028821.1

Summary

About Us

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