Transcript: MGP_C3HHeJ_T0025547.1

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:MGI Symbol;Acc:MGI:1328366]

Gene Synonyms

AU020204, Baf47, Ini1, SNF5/INI1, Snf5, Snf5l1, integrase interactor 1

Location

Chromosome 10: 75,501,395-75,527,071 reverse strand.

Reference strain equivalent

Smarcb1

About this transcript

This transcript has 9 exons, is annotated with 9 domains and features and maps to 235 oligo probes.

Gene

This transcript is a product of gene MGP_C3HHeJ_G0017131.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C3HHeJ_T0025547.1	-	1660	385aa	MGP_C3HHeJ_P0025547	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23936, CCDS48602	D6RDC4 F6U415 Q3UDA4 Q6ZWP4 Q9Z0H3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C3HHeJ_T0025550.1	-	1622	376aa	MGP_C3HHeJ_P0025550	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0025551.1	-	960	78aa	MGP_C3HHeJ_P0025551	Nonsense mediated decay		-	-
MGP_C3HHeJ_T0025552.1	-	427	55aa	MGP_C3HHeJ_P0025552	Nonsense mediated decay		-	-
MGP_C3HHeJ_T0025549.1	-	7402	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C3HHeJ_T0025548.1	-	3599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,660 bps, Translation length: 385 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z0H3

CCDS

This transcript is a member of the Mouse C3H/HeJ CCDS set: CCDS23936, CCDS48602

Version

MGP_C3HHeJ_T0025547.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C3HHeJ_T0025547.1

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: MGP_C3HHeJ_T0025547.1

Summary

About Us

Get help

Our sister sites

Follow us