Transcript: MGP_C3HHeJ_T0020999.1

Description

collagen, type VI, alpha 3 [Source:MGI Symbol;Acc:MGI:88461]

Gene Synonyms

AI507288, Col6a-3

Location

Chromosome 1: 91,813,834-91,894,111 reverse strand.

Reference strain equivalent

Col6a3

About this transcript

This transcript has 41 exons, is annotated with 95 domains and features and maps to 287 oligo probes.

Gene

This transcript is a product of gene MGP_C3HHeJ_G0016062.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C3HHeJ_T0021000.1	-	10073	3261aa	MGP_C3HHeJ_P0021000	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C3HHeJ_T0021001.1	-	8926	2652aa	MGP_C3HHeJ_P0021001	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0020999.1	-	8252	2654aa	MGP_C3HHeJ_P0020999	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56640	A0A087WQN9 A0A087WS16 D3YWD1 E9PWQ3 J3QQ16	-
MGP_C3HHeJ_T0021005.1	-	5321	1703aa	MGP_C3HHeJ_P0021005	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0021006.1	-	476	74aa	MGP_C3HHeJ_P0021006	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0021003.1	-	3261	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C3HHeJ_T0021002.1	-	646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C3HHeJ_T0021004.1	-	615	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 41, Coding exons: 40, Transcript length: 8,252 bps, Translation length: 2,654 residues

CCDS

This transcript is a member of the Mouse C3H/HeJ CCDS set: CCDS56640

Version

MGP_C3HHeJ_T0020999.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_C3HHeJ_T0020999.1

Summary

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Transcript: MGP_C3HHeJ_T0020999.1

Summary

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