Transcript: MGP_BALBcJ_T0075131.1

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Source:MGI Symbol;Acc:MGI:1347008]

Gene Synonyms

AI414586, LH3, lysyl hydroxylase 3

Location

Chromosome 5: 136,919,023-136,928,660 forward strand.

Reference strain equivalent

Plod3

About this transcript

This transcript has 19 exons, is annotated with 12 domains and features and maps to 266 oligo probes.

Gene

This transcript is a product of gene MGP_BALBcJ_G0030191.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_BALBcJ_T0075131.1	-	3280	741aa	MGP_BALBcJ_P0075131	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19759	F6W3Q8 Q9R0E1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_BALBcJ_T0075136.1	-	600	199aa	MGP_BALBcJ_P0075136	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0075133.1	-	2843	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_BALBcJ_T0075132.1	-	2362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_BALBcJ_T0075134.1	-	932	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_BALBcJ_T0075135.1	-	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,280 bps, Translation length: 741 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9R0E1

CCDS

This transcript is a member of the Mouse BALB/cJ CCDS set: CCDS19759

Version

MGP_BALBcJ_T0075131.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_BALBcJ_T0075131.1

Summary

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Transcript: MGP_BALBcJ_T0075131.1

Summary

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