Transcript: MGP_BALBcJ_T0062402.1

Description

extracellular matrix protein 1 [Source:MGI Symbol;Acc:MGI:103060]

Gene Synonyms

AI663821, p85

Location

Chromosome 3: 93,264,637-93,270,071 reverse strand.

Reference strain equivalent

Ecm1

About this transcript

This transcript has 11 exons, is annotated with 19 domains and features and maps to 191 oligo probes.

Gene

This transcript is a product of gene MGP_BALBcJ_G0027563.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_BALBcJ_T0062402.1	-	1901	559aa	MGP_BALBcJ_P0062402	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17619, CCDS57237	D3YV22 D3YV64 D3YZV0 D3Z038 D3Z0U9 D3Z772 F8WI14 Q61508	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_BALBcJ_T0062403.1	-	1895	558aa	MGP_BALBcJ_P0062403	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0062406.1	-	1011	295aa	MGP_BALBcJ_P0062406	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0062405.1	-	906	266aa	MGP_BALBcJ_P0062405	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0062407.1	-	880	251aa	MGP_BALBcJ_P0062407	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0062408.1	-	793	230aa	MGP_BALBcJ_P0062408	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0062409.1	-	529	140aa	MGP_BALBcJ_P0062409	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0062411.1	-	367	80aa	MGP_BALBcJ_P0062411	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0062410.1	-	780	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_BALBcJ_T0062404.1	-	519	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,901 bps, Translation length: 559 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q61508

CCDS

This transcript is a member of the Mouse BALB/cJ CCDS set: CCDS17619, CCDS57237

Version

MGP_BALBcJ_T0062402.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_BALBcJ_T0062402.1

Summary

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Transcript: MGP_BALBcJ_T0062402.1

Summary

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