Transcript: MGP_BALBcJ_T0046983.1

Description

collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]

Location

Chromosome 17: 33,004,528-33,031,754 forward strand.

Reference strain equivalent

Col11a2

About this transcript

This transcript has 64 exons, is annotated with 56 domains and features and maps to 408 oligo probes.

Gene

This transcript is a product of gene MGP_BALBcJ_G0023521.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_BALBcJ_T0046985.1	-	5722	1689aa	MGP_BALBcJ_P0046985	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_BALBcJ_T0046983.1	-	6048	1650aa	MGP_BALBcJ_P0046983	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28640	I7HJS8 I7HPY2 Q3UUU1 Q64739	-
MGP_BALBcJ_T0046984.1	-	5620	1655aa	MGP_BALBcJ_P0046984	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0046987.1	-	2735	771aa	MGP_BALBcJ_P0046987	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0046986.1	-	2090	624aa	MGP_BALBcJ_P0046986	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0046988.1	-	426	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_BALBcJ_T0046990.1	-	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_BALBcJ_T0046989.1	-	351	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 64, Coding exons: 64, Transcript length: 6,048 bps, Translation length: 1,650 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q64739

CCDS

This transcript is a member of the Mouse BALB/cJ CCDS set: CCDS28640

Version

MGP_BALBcJ_T0046983.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_BALBcJ_T0046983.1

Summary

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Transcript: MGP_BALBcJ_T0046983.1

Summary

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