Transcript: MGP_BALBcJ_T0040204.1

Description

protocadherin 9 [Source:MGI Symbol;Acc:MGI:1306801]

Gene Synonyms

1500001L12Rik, A730003J17Rik, C530050I23Rik, C630029H24Rik, LOC382930

Location

Chromosome 14: 86,441,814-87,322,355 reverse strand.

Reference strain equivalent

Pcdh9

About this transcript

This transcript has 5 exons, is annotated with 63 domains and features and maps to 291 oligo probes.

Gene

This transcript is a product of gene MGP_BALBcJ_G0021574.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_BALBcJ_T0040204.1	-	6524	1237aa	MGP_BALBcJ_P0040204	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36992, CCDS79350, CCDS79352	A0A0A6YVP5 A0A0A6YWM0 A0A0A6YWY8 A0A0A6YY09 A0A0A6YY37 F8VPK8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_BALBcJ_T0040205.1	-	6130	1203aa	MGP_BALBcJ_P0040205	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0040206.1	-	5166	1038aa	MGP_BALBcJ_P0040206	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0040207.1	-	5094	1195aa	MGP_BALBcJ_P0040207	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0040208.1	-	3714	1237aa	MGP_BALBcJ_P0040208	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0040211.1	-	3012	873aa	MGP_BALBcJ_P0040211	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0040209.1	-	354	84aa	MGP_BALBcJ_P0040209	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0040210.1	-	655	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 6,524 bps, Translation length: 1,237 residues

CCDS

This transcript is a member of the Mouse BALB/cJ CCDS set: CCDS36992, CCDS79350, CCDS79352

Version

MGP_BALBcJ_T0040204.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_BALBcJ_T0040204.1

Summary

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Transcript: MGP_BALBcJ_T0040204.1

Summary

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