Transcript: MGP_BALBcJ_T0023429.1

Description

upstream transcription factor 1 [Source:MGI Symbol;Acc:MGI:99542]

Gene Synonyms

Usf, bHLHb11, upstream stimulatory factor

Location

Chromosome 1: 170,482,828-170,489,661 forward strand.

Reference strain equivalent

Usf1

About this transcript

This transcript has 10 exons, is annotated with 8 domains and features and maps to 234 oligo probes.

Gene

This transcript is a product of gene MGP_BALBcJ_G0016702.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_BALBcJ_T0023430.1	-	2156	310aa	MGP_BALBcJ_P0023430	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_BALBcJ_T0023435.1	-	1868	296aa	MGP_BALBcJ_P0023435	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0023436.1	-	1812	310aa	MGP_BALBcJ_P0023436	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0023431.1	-	721	148aa	MGP_BALBcJ_P0023431	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_BALBcJ_T0023429.1	-	1115	48aa	MGP_BALBcJ_P0023429	Nonsense mediated decay	CCDS15495	E0CYP7 E9Q722 F8WGH6 Q3UQH7 Q61069	-
MGP_BALBcJ_T0023432.1	-	305	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_BALBcJ_T0023433.1	-	779	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_BALBcJ_T0023438.1	-	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_BALBcJ_T0023437.1	-	492	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_BALBcJ_T0023434.1	-	269	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 10, Coding exons: 4, Transcript length: 1,115 bps, Translation length: 48 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q61069

CCDS

This transcript is a member of the Mouse BALB/cJ CCDS set: CCDS15495

Version

MGP_BALBcJ_T0023429.1

Type

Nonsense mediated decay

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_BALBcJ_T0023429.1

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: MGP_BALBcJ_T0023429.1

Summary

About Us

Get help

Our sister sites

Follow us