Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
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External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
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Custom tracks

Transcript: MGP_AKRJ_T0022589.1

Description

Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:MGI Symbol;Acc:MGI:2682334]

Gene Synonyms

9430023P16Rik, Est1c, Kiaa0250, mKIAA0250

Location

Reference strain equivalent

About this transcript

This transcript has 22 exons, is annotated with 24 domains and features and maps to 258 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_AKRJ_T0022590.1	-	5651	1146aa	MGP_AKRJ_P0022590	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_AKRJ_T0022589.1	-	5626	1134aa	MGP_AKRJ_P0022589	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35740, CCDS48394, CCDS48395	Q5RJH6	-
MGP_AKRJ_T0022591.1	-	3928	1138aa	MGP_AKRJ_P0022591	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_AKRJ_T0022593.1	-	672	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_AKRJ_T0022592.1	-	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_AKRJ_T0022594.1	-	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Protein summary