Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: FBtr0340495 Vsx1-RB

Description

Visual system homeobox 1

Gene Synonyms

Vsx1

Location

About this transcript

This transcript has 3 exons, is annotated with 50 domains and features and maps to 35 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0340495	Vsx1-RB	3633	837aa	FBpp0309431	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U1D9 Q8T990 Q9W4B2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
FBtr0070781	Vsx1-RA	2983	837aa	FBpp0070747	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W4B2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 3,633 bps, Translation length: 837 residues

Version

FBtr0340495

Type

Protein coding

Annotation Method

Feature imported from FlyBase.