retinal degeneration A
rdgA
Primary_assembly X: 8,925,184-9,024,936 forward strand.
This transcript has 16 exons, is annotated with 54 domains and features and maps to 27 oligo probes.
This transcript is a product of gene FBgn0261549 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| FBtr0333601 | rdgA-RH | 8292 | 1462aa | FBpp0305778 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YK83 M9PHG3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| FBtr0333602 | rdgA-RI | 10147 | 1460aa | FBpp0305779 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YK80 M9PH20 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0479750 | rdgA-RL | 5808 | 1365aa | FBpp0428093 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6H2EFG8 C0PVA9 | - |
| FBtr0302660 | rdgA-RA | 5598 | 1457aa | FBpp0291800 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q09103 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0302665 | rdgA-RG | 5583 | 1452aa | FBpp0291805 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F6J4T3 F6J4T4 M9MS31 | - |
| FBtr0344166 | rdgA-RK | 5561 | 1314aa | FBpp0310580 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | X2JEJ9 | - |
| FBtr0344165 | rdgA-RJ | 5497 | 1307aa | FBpp0310579 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | X2JE67 | - |
| FBtr0302662 | rdgA-RC | 4974 | 1024aa | FBpp0291802 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0302663 | rdgA-RD | 4276 | 1009aa | FBpp0291803 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9MSN3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0302664 | rdgA-RE | 4222 | 991aa | FBpp0291804 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A023GPM5 Q29QH6 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0302661 | rdgA-RB | 3919 | 1027aa | FBpp0291801 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |