brain tumor
brat
Primary_assembly 2L: 19,158,540-19,179,758 forward strand.
This transcript has 3 exons, is annotated with 39 domains and features and maps to 38 oligo probes.
This transcript is a product of gene FBgn0010300 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| FBtr0336627 | brat-RE | 6258 | 1061aa | FBpp0307610 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4YXN6 B4YXN7 B4YXP0 B4YXP2 B4YXP6 M9MSJ1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0081160 | brat-RC | 12088 | 1037aa | FBpp0089239 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E8NHB3 Q8MQJ9 | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| FBtr0081159 | brat-RB | 4963 | 1037aa | FBpp0080703 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4YXP4 E8NHB3 Q8MQJ9 | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| FBtr0344846 | brat-RF | 4869 | 1037aa | FBpp0311161 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E8NHB3 Q8MQJ9 | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| FBtr0081158 | brat-RA | 4544 | 1037aa | FBpp0080702 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E8NHB3 Q8MQJ9 | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |