Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
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Gene: Lmx1a FBgn0052105

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Description

LIM homeobox transcription factor 1 alpha

Gene Synonyms

Lmx1a

Location

Primary_assembly 3L: 12,329,232-12,335,901 forward strand.

BDGP6.54:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 3 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0075953	Lmx1a-RB	2643	640aa	FBpp0075685	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTW5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0333837	Lmx1a-RC	2640	639aa	FBpp0305971	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCA3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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