Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cph FBgn0029939

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Description

Chronophage

Gene Synonyms

Cph

Location

Primary_assembly X: 7,137,723-7,241,932 forward strand.

BDGP6.54:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 328 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0474234	Cph-RK	5755	1254aa	FBpp0423187	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A499JF18	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
FBtr0309030	Cph-RI	6934	1207aa	FBpp0301059	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9YJL2 G2J654 Q494J4 R9PY46	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
FBtr0301240	Cph-RG	6154	1209aa	FBpp0290458	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JV12	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
FBtr0474235	Cph-RL	5755	1213aa	FBpp0423188	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JV11 B4YWD6 C7LA65	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0339815	Cph-RJ	5637	1140aa	FBpp0308848	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A023GPJ3 F6JBF5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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