Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Clk FBgn0023076

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Description

Clock

Gene Synonyms

Clk

Location

Primary_assembly 3L: 7,763,233-7,775,603 reverse strand.

BDGP6.54:AE014296.5

About this gene

This gene has 5 transcripts (splice variants), 731 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0100132	Clk-RD	3697	1027aa	FBpp0099478	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O61735	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0076785	Clk-RA	4422	1023aa	FBpp0076500	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G7H802	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
FBtr0334648	Clk-RH	3765	895aa	FBpp0306710	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G7H802	-
FBtr0100134	Clk-RF	3695	961aa	FBpp0099480	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
FBtr0334647	Clk-RG	3028	895aa	FBpp0306709	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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