Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: rfx1a ENSTRUG00000012387

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Description

regulatory factor X, 1a (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-070424-94]

Location

Primary_assembly 5: 6,844,950-6,853,934 forward strand.

fTakRub1.2:LR584247.1

About this gene

This gene has 5 transcripts (splice variants), 190 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSTRUT00000070336.1	rfx1a-201	3733	907aa	ENSTRUP00000081430.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A674P6F0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSTRUT00000082343.1	rfx1a-202	3619	869aa	ENSTRUP00000084305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A674PF61	-
ENSTRUT00000069366.1	rfx1a-205	3616	871aa	ENSTRUP00000059652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A674ME05	-
ENSTRUT00000070799.1	rfx1a-203	3565	851aa	ENSTRUP00000060924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A674MIU0	-
ENSTRUT00000031489.3	rfx1a-204	2604	590aa	ENSTRUP00000031367.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2U356	-

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Summary

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