Transcript: ENST00000955444.1 EFNB2-203

Description

ephrin B2 [Source:HGNC Symbol;Acc:HGNC:3227]

Gene Synonyms

EPLG5, HTK-L, HTKL, LERK5, MGC126226, MGC126227, MGC126228

Location

Chromosome 13: 106,489,750-106,535,659 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 23 domains and features and maps to 513 oligo probes.

Gene

This transcript is a product of gene ENSG00000125266.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000646441.1	EFNB2-202	4995	333aa	ENSP00000493716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9507	P52799	NM_004093.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000955444.1	EFNB2-203	4894	302aa	ENSP00000625503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000643990.1	EFNB2-201	3836	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,894 bps, Translation length: 302 residues

Version

ENST00000955444.1

Type

Protein coding

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000955444.1 EFNB2-203

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Transcript: ENST00000955444.1 EFNB2-203

Summary

About Us

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