Transcript: ENST00000780970.1 LINC02490-203

Description

long intergenic non-protein coding RNA 2490 [Source:HGNC Symbol;Acc:HGNC:53471]

Gene Synonyms

RP11-209E8

Location

Chromosome 15: 52,804,497-53,194,061 forward strand.

About this transcript

This transcript has 6 exons, is associated with 185354 variant alleles and maps to 17 oligo probes.

Gene

This transcript is a product of gene ENSG00000259237.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000780970.1	LINC02490-203	1067	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000780972.1	LINC02490-205	1623	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000780974.1	LINC02490-207	1572	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000559915.2	LINC02490-201	1255	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000780971.1	LINC02490-204	1239	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000780991.1	LINC02490-224	1204	No protein	-	lncRNA	-	-
ENST00000692805.2	LINC02490-202	1199	No protein	-	lncRNA	-	-
ENST00000780983.1	LINC02490-216	1183	No protein	-	lncRNA	-	-
ENST00000780981.1	LINC02490-214	1111	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000780976.1	LINC02490-209	1052	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000780988.1	LINC02490-221	1013	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000780977.1	LINC02490-210	927	No protein	-	lncRNA	-	-
ENST00000780975.1	LINC02490-208	917	No protein	-	lncRNA	-	-
ENST00000780973.1	LINC02490-206	787	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000780979.1	LINC02490-212	746	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000780987.1	LINC02490-220	726	No protein	-	lncRNA	-	-
ENST00000780995.1	LINC02490-228	701	No protein	-	lncRNA	-	-
ENST00000780990.1	LINC02490-223	684	No protein	-	lncRNA	-	-
ENST00000780993.1	LINC02490-226	684	No protein	-	lncRNA	-	-
ENST00000780978.1	LINC02490-211	662	No protein	-	lncRNA	-	-
ENST00000780985.1	LINC02490-218	592	No protein	-	lncRNA	-	-
ENST00000780980.1	LINC02490-213	577	No protein	-	lncRNA	-	-
ENST00000780992.1	LINC02490-225	558	No protein	-	lncRNA	-	-
ENST00000780986.1	LINC02490-219	542	No protein	-	lncRNA	-	-
ENST00000780989.1	LINC02490-222	542	No protein	-	lncRNA	-	-
ENST00000780984.1	LINC02490-217	493	No protein	-	lncRNA	-	-
ENST00000780982.1	LINC02490-215	369	No protein	-	lncRNA	-	-
ENST00000780996.1	LINC02490-229	367	No protein	-	lncRNA	-	-
ENST00000780994.1	LINC02490-227	355	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,067 bps,

Version

ENST00000780970.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000780970.1 LINC02490-203

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Transcript: ENST00000780970.1 LINC02490-203

Summary

About Us

Get help

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