Transcript: ENST00000711329.1 SMIM45-202

Description

small integral membrane protein 45 [Source:HGNC Symbol;Acc:HGNC:27930]

Gene Synonyms

LINC00634

Location

Chromosome 22: 41,947,194-41,958,939 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 5410 variant alleles and maps to 177 oligo probes.

Gene

This transcript is a product of gene ENSG00000205704.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000381348.5	SMIM45-201	1540	68aa	ENSP00000499702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93175	A0A590UK49	NM_001395940.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000711329.1	SMIM45-202	1381	68aa	ENSP00000518693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93175	-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,381 bps, Translation length: 68 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS93175

Version

ENST00000711329.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000711329.1 SMIM45-202

Summary

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Transcript: ENST00000711329.1 SMIM45-202

Summary

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