Transcript: ENST00000689584.1 H2AC25-202

Description

H2A clustered histone 25 [Source:HGNC Symbol;Acc:HGNC:20507]

Gene Synonyms

H2AW, HIST3H2A, MGC3165

Location

Chromosome 1: 228,457,364-228,457,873 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 15 domains and features, is associated with 473 variant alleles and maps to 133 oligo probes.

Gene

This transcript is a product of gene ENSG00000181218.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000689584.1	H2AC25-202	510	130aa	ENSP00000508783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1573	Q7L7L0	NM_033445.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000366695.3	H2AC25-201	895	130aa	ENSP00000355656.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1573	Q7L7L0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000691624.1	H2AC25-203	1615	130aa	ENSP00000510421.1	Nonsense mediated decay	CCDS1573	Q7L7L0	-	-

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 510 bps, Translation length: 130 residues

MANE

This MANE Select transcript contains ENSP00000508783 and matches to NM_033445.3 and NP_254280.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7L7L0

CCDS

This transcript is a member of the Human CCDS set: CCDS1573

Version

ENST00000689584.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000689584.1 H2AC25-202

Summary

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Transcript: ENST00000689584.1 H2AC25-202

Summary

About Us

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