Transcript: ENST00000686983.1 SUPT20HL1-202

Description

SUPT20H like 1 [Source:HGNC Symbol;Acc:HGNC:30773]

Gene Synonyms

FAM48B1, SPT20L

Location

Chromosome X: 24,360,639-24,367,839 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 19 domains and features, is associated with 2481 variant alleles and maps to 345 oligo probes.

Gene

This transcript is a product of gene ENSG00000223731.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000686983.1	SUPT20HL1-202	7201	887aa	ENSP00000509731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94581	A0A7I2YQ69	NM_001136234.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000436466.2	SUPT20HL1-201	2753	887aa	ENSP00000502907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94581	A0A7I2YQ69	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 7,201 bps, Translation length: 887 residues

MANE

This MANE Select transcript contains ENSP00000509731 and matches to NM_001136234.3 and NP_001129706.3

CCDS

This transcript is a member of the Human CCDS set: CCDS94581

Version

ENST00000686983.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000686983.1 SUPT20HL1-202

Summary

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Transcript: ENST00000686983.1 SUPT20HL1-202

Summary

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