Transcript: ENST00000683778.1 ZNF165-202

Description

zinc finger protein 165 [Source:HGNC Symbol;Acc:HGNC:12953]

Gene Synonyms

CT53, ZSCAN7

Location

Chromosome 6: 28,080,568-28,089,563 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 39 domains and features, is associated with 3594 variant alleles and maps to 278 oligo probes.

Gene

This transcript is a product of gene ENSG00000197279.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000683778.1	ZNF165-202	1954	485aa	ENSP00000507525.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4643	P49910 Q53Z40	NM_001376491.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000377325.2	ZNF165-201	2514	485aa	ENSP00000366542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4643	P49910 Q53Z40	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,954 bps, Translation length: 485 residues

MANE

This MANE Select transcript contains ENSP00000507525 and matches to NM_001376491.1 and NP_001363420.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P49910

CCDS

This transcript is a member of the Human CCDS set: CCDS4643

Version

ENST00000683778.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000683778.1 ZNF165-202

Summary

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Transcript: ENST00000683778.1 ZNF165-202

Summary

About Us

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