Transcript: ENST00000672824.1 SMIM42-201

Description

small integral membrane protein 42 [Source:HGNC Symbol;Acc:HGNC:55000]

Location

Chromosome 1: 158,127,287-158,128,301 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 5 domains and features, is associated with 438 variant alleles and maps to 74 oligo probes.

Gene

This transcript is a product of gene ENSG00000288460.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000672824.1	SMIM42-201	1015	70aa	ENSP00000499955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91073	A0A5F9ZH02	NM_001395415.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,015 bps, Translation length: 70 residues

MANE

This MANE Select transcript contains ENSP00000499955 and matches to NM_001395415.1 and NP_001382344.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A5F9ZH02

CCDS

This transcript is a member of the Human CCDS set: CCDS91073

Version

ENST00000672824.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

CAGE supported TSS [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000672824.1 SMIM42-201

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Transcript: ENST00000672824.1 SMIM42-201

Summary

About Us

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