Transcript: ENST00000672295.1 RFX1-217

Description

regulatory factor X1 [Source:HGNC Symbol;Acc:HGNC:9982]

Gene Synonyms

EF-C

Location

Scaffold HG109_PATCH: 173,371-218,161 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 29 domains and features, is associated with 21018 variant alleles and maps to 826 oligo probes.

Gene

This transcript is a product of gene ENSG00000288283.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000672295.1	RFX1-217	4375	979aa	ENSP00000500760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P22670	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000673115.1	RFX1-221	886	158aa	ENSP00000499946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7EIZ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000673313.1	RFX1-222	440	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000672484.1	RFX1-218	2122	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000672908.1	RFX1-220	848	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000671957.1	RFX1-216	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000672811.1	RFX1-219	241	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 21, Coding exons: 20, Transcript length: 4,375 bps, Translation length: 979 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P22670

Version

ENST00000672295.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000672295.1 RFX1-217

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Transcript: ENST00000672295.1 RFX1-217

Summary

About Us

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