Transcript: ENST00000671564.1 LINC02443-215

Description

long intergenic non-protein coding RNA 2443 [Source:HGNC Symbol;Acc:HGNC:53375]

Location

Chromosome 12: 5,236,719-5,243,140 reverse strand.

About this transcript

This transcript has 4 exons and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSG00000256115.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000790117.1	LINC02443-216	1693	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790124.1	LINC02443-223	2809	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654905.1	LINC02443-207	1863	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790119.1	LINC02443-218	1647	No protein	-	lncRNA	-	-
ENST00000790122.1	LINC02443-221	1612	No protein	-	lncRNA	-	-
ENST00000790121.1	LINC02443-220	1602	No protein	-	lncRNA	-	-
ENST00000790134.1	LINC02443-233	1566	No protein	-	lncRNA	-	-
ENST00000790133.1	LINC02443-232	1529	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000652862.1	LINC02443-205	1471	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664597.1	LINC02443-212	1460	No protein	-	lncRNA	-	-
ENST00000790120.1	LINC02443-219	1439	No protein	-	lncRNA	-	-
ENST00000790118.1	LINC02443-217	1347	No protein	-	lncRNA	-	-
ENST00000669681.1	LINC02443-214	1345	No protein	-	lncRNA	-	-
ENST00000669073.1	LINC02443-213	1299	No protein	-	lncRNA	-	-
ENST00000544717.6	LINC02443-204	1196	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000790135.1	LINC02443-234	1165	No protein	-	lncRNA	-	-
ENST00000663953.1	LINC02443-211	1163	No protein	-	lncRNA	-	-
ENST00000790136.1	LINC02443-235	1090	No protein	-	lncRNA	-	-
ENST00000790130.1	LINC02443-229	1037	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000790132.1	LINC02443-231	1020	No protein	-	lncRNA	-	-
ENST00000790127.1	LINC02443-226	976	No protein	-	lncRNA	-	-
ENST00000655694.1	LINC02443-208	973	No protein	-	lncRNA	-	-
ENST00000790129.1	LINC02443-228	912	No protein	-	lncRNA	-	-
ENST00000790131.1	LINC02443-230	883	No protein	-	lncRNA	-	-
ENST00000536518.2	LINC02443-201	806	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000790126.1	LINC02443-225	790	No protein	-	lncRNA	-	-
ENST00000790139.1	LINC02443-238	785	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671564.1	LINC02443-215	781	No protein	-	lncRNA	-	-
ENST00000790125.1	LINC02443-224	774	No protein	-	lncRNA	-	-
ENST00000790137.1	LINC02443-236	770	No protein	-	lncRNA	-	-
ENST00000540619.6	LINC02443-203	720	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000662631.2	LINC02443-210	713	No protein	-	lncRNA	-	-
ENST00000790138.1	LINC02443-237	711	No protein	-	lncRNA	-	-
ENST00000654414.2	LINC02443-206	705	No protein	-	lncRNA	-	-
ENST00000540237.3	LINC02443-202	704	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000790123.1	LINC02443-222	644	No protein	-	lncRNA	-	-
ENST00000790140.1	LINC02443-239	643	No protein	-	lncRNA	-	-
ENST00000790141.1	LINC02443-240	583	No protein	-	lncRNA	-	-
ENST00000790128.1	LINC02443-227	521	No protein	-	lncRNA	-	-
ENST00000660094.1	LINC02443-209	489	No protein	-	lncRNA	-	-
ENST00000790143.1	LINC02443-242	335	No protein	-	lncRNA	-	-
ENST00000790142.1	LINC02443-241	319	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 781 bps,

Version

ENST00000671564.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000671564.1 LINC02443-215

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Transcript: ENST00000671564.1 LINC02443-215

Summary

About Us

Get help

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