Transcript: ENST00000671507.1 ERVK13-1-244

Description

endogenous retrovirus group K13 member 1 [Source:HGNC Symbol;Acc:HGNC:27548]

Location

Chromosome 16: 2,661,148-2,672,273 reverse strand.

About this transcript

This transcript has 3 exons and maps to 257 oligo probes.

Gene

This transcript is a product of gene ENSG00000260565.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000619862.2	ERVK13-1-208	13092	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000717621.1	ERVK13-1-248	7433	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000670385.1	ERVK13-1-241	6510	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656684.1	ERVK13-1-213	6491	No protein	-	lncRNA	-	-
ENST00000654702.1	ERVK13-1-210	6382	No protein	-	lncRNA	-	-
ENST00000568395.2	ERVK13-1-205	6366	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000671018.1	ERVK13-1-242	5775	No protein	-	lncRNA	-	-
ENST00000658483.1	ERVK13-1-218	4937	No protein	-	lncRNA	-	-
ENST00000660569.1	ERVK13-1-221	4896	No protein	-	lncRNA	-	-
ENST00000661849.1	ERVK13-1-223	4788	No protein	-	lncRNA	-	-
ENST00000665388.1	ERVK13-1-230	4728	No protein	-	lncRNA	-	-
ENST00000657531.1	ERVK13-1-215	4705	No protein	-	lncRNA	-	-
ENST00000669151.1	ERVK13-1-239	4634	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669589.1	ERVK13-1-240	4581	No protein	-	lncRNA	-	-
ENST00000659274.1	ERVK13-1-220	4230	No protein	-	lncRNA	-	-
ENST00000657811.1	ERVK13-1-216	4225	No protein	-	lncRNA	-	-
ENST00000653956.1	ERVK13-1-209	3937	No protein	-	lncRNA	-	-
ENST00000665678.1	ERVK13-1-231	3698	No protein	-	lncRNA	-	-
ENST00000667008.1	ERVK13-1-235	3344	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000569465.1	ERVK13-1-207	3321	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000661380.1	ERVK13-1-222	3036	No protein	-	lncRNA	-	-
ENST00000663519.1	ERVK13-1-229	2961	No protein	-	lncRNA	-	-
ENST00000654949.1	ERVK13-1-211	2810	No protein	-	lncRNA	-	-
ENST00000661984.1	ERVK13-1-224	2718	No protein	-	lncRNA	-	-
ENST00000662929.1	ERVK13-1-226	2607	No protein	-	lncRNA	-	-
ENST00000658381.1	ERVK13-1-217	2295	No protein	-	lncRNA	-	-
ENST00000662175.1	ERVK13-1-225	1977	No protein	-	lncRNA	-	-
ENST00000662943.1	ERVK13-1-227	1929	No protein	-	lncRNA	-	-
ENST00000668680.1	ERVK13-1-238	1865	No protein	-	lncRNA	-	-
ENST00000659184.1	ERVK13-1-219	1800	No protein	-	lncRNA	-	-
ENST00000655820.1	ERVK13-1-212	1763	No protein	-	lncRNA	-	-
ENST00000671475.1	ERVK13-1-243	1742	No protein	-	lncRNA	-	-
ENST00000562807.6	ERVK13-1-201	1603	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000667109.1	ERVK13-1-236	1593	No protein	-	lncRNA	-	-
ENST00000663379.1	ERVK13-1-228	1587	No protein	-	lncRNA	-	-
ENST00000666404.1	ERVK13-1-234	1582	No protein	-	lncRNA	-	-
ENST00000657292.1	ERVK13-1-214	1522	No protein	-	lncRNA	-	-
ENST00000666266.1	ERVK13-1-233	1517	No protein	-	lncRNA	-	-
ENST00000671507.1	ERVK13-1-244	1510	No protein	-	lncRNA	-	-
ENST00000564340.3	ERVK13-1-203	1483	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000566343.6	ERVK13-1-204	1405	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000668411.1	ERVK13-1-237	1371	No protein	-	lncRNA	-	-
ENST00000564160.1	ERVK13-1-202	983	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000701902.1	ERVK13-1-247	947	No protein	-	lncRNA	-	-
ENST00000685469.1	ERVK13-1-245	865	No protein	-	lncRNA	-	-
ENST00000665778.1	ERVK13-1-232	745	No protein	-	lncRNA	-	-
ENST00000687207.2	ERVK13-1-246	335	No protein	-	lncRNA	-	-
ENST00000568970.1	ERVK13-1-206	278	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,510 bps,

Version

ENST00000671507.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000671507.1 ERVK13-1-244

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000671507.1 ERVK13-1-244

Summary

About Us

Get help

Our sister sites

Follow us