Transcript: ENST00000671306.1 ATP13A3-DT-210

Description

ATP13A3 divergent transcript [Source:HGNC Symbol;Acc:HGNC:48570]

Gene Synonyms

LINC00884

Location

Chromosome 3: 194,487,146-194,500,150 forward strand.

About this transcript

This transcript has 2 exons and maps to 185 oligo probes.

Gene

This transcript is a product of gene ENSG00000233058.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000662856.1	ATP13A3-DT-207	4437	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000448892.2	ATP13A3-DT-202	5557	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000671306.1	ATP13A3-DT-210	3794	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000437597.2	ATP13A3-DT-201	2398	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000670064.1	ATP13A3-DT-209	2232	No protein	-	lncRNA	-	-
ENST00000685672.2	ATP13A3-DT-211	2083	No protein	-	lncRNA	-	-
ENST00000847430.1	ATP13A3-DT-212	2035	No protein	-	lncRNA	-	-
ENST00000665891.1	ATP13A3-DT-208	2027	No protein	-	lncRNA	-	-
ENST00000657621.1	ATP13A3-DT-205	1559	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656823.1	ATP13A3-DT-204	1343	No protein	-	lncRNA	-	-
ENST00000653684.1	ATP13A3-DT-203	1144	No protein	-	lncRNA	-	-
ENST00000847431.1	ATP13A3-DT-213	882	No protein	-	lncRNA	-	-
ENST00000847432.1	ATP13A3-DT-214	829	No protein	-	lncRNA	-	-
ENST00000661941.3	ATP13A3-DT-206	709	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 3,794 bps,

Version

ENST00000671306.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000671306.1 ATP13A3-DT-210

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Transcript: ENST00000671306.1 ATP13A3-DT-210

Summary

About Us

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