Transcript: ENST00000671230.1 MIR9-2HG-240

Description

MIR9-2 host gene [Source:HGNC Symbol;Acc:HGNC:42810]

Gene Synonyms

ECONEXIN, EYELINC1, LINC00461, LOC645323, NDIME, VISC

Location

Chromosome 5: 88,669,173-88,673,306 reverse strand.

About this transcript

This transcript has 2 exons and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000245526.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000715786.1	MIR9-2HG-249	1486	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000669424.1	MIR9-2HG-238	8262	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670494.2	MIR9-2HG-239	7579	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664240.2	MIR9-2HG-231	6250	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662060.1	MIR9-2HG-226	5116	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665865.2	MIR9-2HG-233	4522	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665062.2	MIR9-2HG-232	4332	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000505030.6	MIR9-2HG-205	3957	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000509265.2	MIR9-2HG-211	3694	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000511014.8	MIR9-2HG-214	3584	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000666195.1	MIR9-2HG-234	3409	No protein	-	lncRNA	-	-
ENST00000663276.2	MIR9-2HG-229	3406	No protein	-	lncRNA	-	-
ENST00000500197.6	MIR9-2HG-201	3381	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000666342.1	MIR9-2HG-236	2996	No protein	-	lncRNA	-	-
ENST00000658935.2	MIR9-2HG-223	2923	No protein	-	lncRNA	-	-
ENST00000655936.2	MIR9-2HG-221	2830	No protein	-	lncRNA	-	-
ENST00000504246.6	MIR9-2HG-204	2621	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000661688.1	MIR9-2HG-225	2469	No protein	-	lncRNA	-	-
ENST00000787115.1	MIR9-2HG-293	2403	No protein	-	lncRNA	-	-
ENST00000671230.1	MIR9-2HG-240	2255	No protein	-	lncRNA	-	-
ENST00000659156.2	MIR9-2HG-224	2239	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656755.2	MIR9-2HG-222	2074	No protein	-	lncRNA	-	-
ENST00000787100.1	MIR9-2HG-282	2015	No protein	-	lncRNA	-	-
ENST00000668089.2	MIR9-2HG-237	2012	No protein	-	lncRNA	-	-
ENST00000692902.2	MIR9-2HG-244	1860	No protein	-	lncRNA	-	-
ENST00000666297.2	MIR9-2HG-235	1825	No protein	-	lncRNA	-	-
ENST00000787069.1	MIR9-2HG-251	1673	No protein	-	lncRNA	-	-
ENST00000506041.2	MIR9-2HG-207	1626	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000513893.6	MIR9-2HG-217	1595	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000513026.7	MIR9-2HG-215	1514	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000509783.6	MIR9-2HG-213	1494	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000787103.1	MIR9-2HG-285	1465	No protein	-	lncRNA	-	-
ENST00000515885.6	MIR9-2HG-218	1421	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000662146.1	MIR9-2HG-227	1291	No protein	-	lncRNA	-	-
ENST00000787089.1	MIR9-2HG-271	1164	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663994.2	MIR9-2HG-230	1158	No protein	-	lncRNA	-	-
ENST00000504034.3	MIR9-2HG-203	1114	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000652822.2	MIR9-2HG-220	1108	No protein	-	lncRNA	-	-
ENST00000787113.1	MIR9-2HG-291	1101	No protein	-	lncRNA	-	-
ENST00000787068.1	MIR9-2HG-250	1097	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787070.1	MIR9-2HG-252	1058	No protein	-	lncRNA	-	-
ENST00000787088.1	MIR9-2HG-270	1036	No protein	-	lncRNA	-	-
ENST00000787111.1	MIR9-2HG-290	1014	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000509405.7	MIR9-2HG-212	983	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000787094.1	MIR9-2HG-276	981	No protein	-	lncRNA	-	-
ENST00000787104.1	MIR9-2HG-286	980	No protein	-	lncRNA	-	-
ENST00000787072.1	MIR9-2HG-254	975	No protein	-	lncRNA	-	-
ENST00000787079.1	MIR9-2HG-261	967	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000692551.2	MIR9-2HG-243	961	No protein	-	lncRNA	-	-
ENST00000787075.1	MIR9-2HG-257	957	No protein	-	lncRNA	-	-
ENST00000787091.1	MIR9-2HG-273	949	No protein	-	lncRNA	-	-
ENST00000701425.2	MIR9-2HG-246	945	No protein	-	lncRNA	-	-
ENST00000787085.1	MIR9-2HG-267	940	No protein	-	lncRNA	-	-
ENST00000787078.1	MIR9-2HG-260	939	No protein	-	lncRNA	-	-
ENST00000787084.1	MIR9-2HG-266	923	No protein	-	lncRNA	-	-
ENST00000787076.1	MIR9-2HG-258	907	No protein	-	lncRNA	-	-
ENST00000687262.2	MIR9-2HG-241	896	No protein	-	lncRNA	-	-
ENST00000513805.7	MIR9-2HG-216	890	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000787080.1	MIR9-2HG-262	888	No protein	-	lncRNA	-	-
ENST00000689967.2	MIR9-2HG-242	884	No protein	-	lncRNA	-	-
ENST00000787073.1	MIR9-2HG-255	867	No protein	-	lncRNA	-	-
ENST00000787086.1	MIR9-2HG-268	853	No protein	-	lncRNA	-	-
ENST00000787092.1	MIR9-2HG-274	840	No protein	-	lncRNA	-	-
ENST00000787077.1	MIR9-2HG-259	839	No protein	-	lncRNA	-	-
ENST00000787081.1	MIR9-2HG-263	833	No protein	-	lncRNA	-	-
ENST00000508885.7	MIR9-2HG-210	826	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000787098.1	MIR9-2HG-280	823	No protein	-	lncRNA	-	-
ENST00000701556.2	MIR9-2HG-247	822	No protein	-	lncRNA	-	-
ENST00000506664.8	MIR9-2HG-208	813	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000506014.6	MIR9-2HG-206	801	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000502301.6	MIR9-2HG-202	785	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000787090.1	MIR9-2HG-272	785	No protein	-	lncRNA	-	-
ENST00000787074.1	MIR9-2HG-256	780	No protein	-	lncRNA	-	-
ENST00000787096.1	MIR9-2HG-278	746	No protein	-	lncRNA	-	-
ENST00000702076.2	MIR9-2HG-248	736	No protein	-	lncRNA	-	-
ENST00000787082.1	MIR9-2HG-264	707	No protein	-	lncRNA	-	-
ENST00000787095.1	MIR9-2HG-277	678	No protein	-	lncRNA	-	-
ENST00000787083.1	MIR9-2HG-265	672	No protein	-	lncRNA	-	-
ENST00000662192.1	MIR9-2HG-228	644	No protein	-	lncRNA	-	-
ENST00000787108.1	MIR9-2HG-288	629	No protein	-	lncRNA	-	-
ENST00000700760.1	MIR9-2HG-245	620	No protein	-	lncRNA	-	-
ENST00000787087.1	MIR9-2HG-269	619	No protein	-	lncRNA	-	-
ENST00000787117.1	MIR9-2HG-295	607	No protein	-	lncRNA	-	-
ENST00000787114.1	MIR9-2HG-292	576	No protein	-	lncRNA	-	-
ENST00000787093.1	MIR9-2HG-275	566	No protein	-	lncRNA	-	-
ENST00000506978.5	MIR9-2HG-209	564	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000787102.1	MIR9-2HG-284	554	No protein	-	lncRNA	-	-
ENST00000787106.1	MIR9-2HG-287	544	No protein	-	lncRNA	-	-
ENST00000787101.1	MIR9-2HG-283	530	No protein	-	lncRNA	-	-
ENST00000787110.1	MIR9-2HG-289	519	No protein	-	lncRNA	-	-
ENST00000787099.1	MIR9-2HG-281	509	No protein	-	lncRNA	-	-
ENST00000787116.1	MIR9-2HG-294	486	No protein	-	lncRNA	-	-
ENST00000606189.1	MIR9-2HG-219	421	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000787097.1	MIR9-2HG-279	390	No protein	-	lncRNA	-	-
ENST00000787071.1	MIR9-2HG-253	351	No protein	-	lncRNA	-	-
ENST00000787119.1	MIR9-2HG-297	308	No protein	-	lncRNA	-	-
ENST00000787118.1	MIR9-2HG-296	225	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,255 bps,

Version

ENST00000671230.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000671230.1 MIR9-2HG-240

Summary

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Transcript: ENST00000671230.1 MIR9-2HG-240

Summary

About Us

Get help

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