Transcript: ENST00000671194.1 LINC01122-226

Description

long intergenic non-protein coding RNA 1122 [Source:HGNC Symbol;Acc:HGNC:49267]

Gene Synonyms

AC007092.1, FLJ30838

Location

Chromosome 2: 58,925,609-58,930,766 forward strand.

About this transcript

This transcript has 3 exons and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000233723.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000422723.6	LINC01122-202	1423	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000452840.5	LINC01122-208	4077	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000656381.1	LINC01122-215	2587	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665478.1	LINC01122-222	2495	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000650010.2	LINC01122-210	2398	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821274.1	LINC01122-238	2229	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427421.5	LINC01122-204	2183	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000656135.1	LINC01122-213	2165	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000429095.6	LINC01122-205	2086	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000409590.1	LINC01122-201	2036	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000650056.1	LINC01122-211	1864	No protein	-	lncRNA	-	-
ENST00000657378.1	LINC01122-217	1822	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821297.1	LINC01122-261	1776	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821283.1	LINC01122-247	1703	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663407.1	LINC01122-219	1639	No protein	-	lncRNA	-	-
ENST00000821303.1	LINC01122-267	1620	No protein	-	lncRNA	-	-
ENST00000662396.1	LINC01122-218	1589	No protein	-	lncRNA	-	-
ENST00000821286.1	LINC01122-250	1588	No protein	-	lncRNA	-	-
ENST00000821284.1	LINC01122-248	1586	No protein	-	lncRNA	-	-
ENST00000821287.1	LINC01122-251	1576	No protein	-	lncRNA	-	-
ENST00000821281.1	LINC01122-245	1557	No protein	-	lncRNA	-	-
ENST00000821270.1	LINC01122-234	1546	No protein	-	lncRNA	-	-
ENST00000657130.1	LINC01122-216	1500	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655072.1	LINC01122-212	1370	No protein	-	lncRNA	-	-
ENST00000422793.4	LINC01122-203	1275	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000429664.6	LINC01122-206	1268	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000668410.1	LINC01122-224	1266	No protein	-	lncRNA	-	-
ENST00000821273.1	LINC01122-237	1261	No protein	-	lncRNA	-	-
ENST00000821293.1	LINC01122-257	1247	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821271.1	LINC01122-235	1236	No protein	-	lncRNA	-	-
ENST00000821278.1	LINC01122-242	1236	No protein	-	lncRNA	-	-
ENST00000665525.1	LINC01122-223	1235	No protein	-	lncRNA	-	-
ENST00000665429.1	LINC01122-221	1223	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821280.1	LINC01122-244	1213	No protein	-	lncRNA	-	-
ENST00000664741.2	LINC01122-220	1210	No protein	-	lncRNA	-	-
ENST00000669630.1	LINC01122-225	1203	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000684946.1	LINC01122-227	1190	No protein	-	lncRNA	-	-
ENST00000821282.1	LINC01122-246	1182	No protein	-	lncRNA	-	-
ENST00000821298.1	LINC01122-262	1181	No protein	-	lncRNA	-	-
ENST00000715766.1	LINC01122-231	1170	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821269.1	LINC01122-233	1136	No protein	-	lncRNA	-	-
ENST00000821277.1	LINC01122-241	1117	No protein	-	lncRNA	-	-
ENST00000687108.2	LINC01122-228	1114	No protein	-	lncRNA	-	-
ENST00000821285.1	LINC01122-249	1089	No protein	-	lncRNA	-	-
ENST00000821279.1	LINC01122-243	1059	No protein	-	lncRNA	-	-
ENST00000821268.1	LINC01122-232	1036	No protein	-	lncRNA	-	-
ENST00000821276.1	LINC01122-240	926	No protein	-	lncRNA	-	-
ENST00000701416.2	LINC01122-229	905	No protein	-	lncRNA	-	-
ENST00000821291.1	LINC01122-255	870	No protein	-	lncRNA	-	-
ENST00000821290.1	LINC01122-254	846	No protein	-	lncRNA	-	-
ENST00000821295.1	LINC01122-259	827	No protein	-	lncRNA	-	-
ENST00000821275.1	LINC01122-239	802	No protein	-	lncRNA	-	-
ENST00000455219.8	LINC01122-209	796	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000821292.1	LINC01122-256	795	No protein	-	lncRNA	-	-
ENST00000821294.1	LINC01122-258	750	No protein	-	lncRNA	-	-
ENST00000656193.1	LINC01122-214	748	No protein	-	lncRNA	-	-
ENST00000821296.1	LINC01122-260	727	No protein	-	lncRNA	-	-
ENST00000702114.2	LINC01122-230	716	No protein	-	lncRNA	-	-
ENST00000821289.1	LINC01122-253	702	No protein	-	lncRNA	-	-
ENST00000449448.6	LINC01122-207	682	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000671194.1	LINC01122-226	577	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821272.1	LINC01122-236	525	No protein	-	lncRNA	-	-
ENST00000821300.1	LINC01122-264	450	No protein	-	lncRNA	-	-
ENST00000821301.1	LINC01122-265	410	No protein	-	lncRNA	-	-
ENST00000821299.1	LINC01122-263	388	No protein	-	lncRNA	-	-
ENST00000821302.1	LINC01122-266	381	No protein	-	lncRNA	-	-
ENST00000821304.1	LINC01122-268	364	No protein	-	lncRNA	-	-
ENST00000821288.1	LINC01122-252	325	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 577 bps,

Version

ENST00000671194.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000671194.1 LINC01122-226

Summary

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Transcript: ENST00000671194.1 LINC01122-226

Summary

About Us

Get help

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