Transcript: ENST00000671116.1 LINC01473-220

Description

long intergenic non-protein coding RNA 1473 [Source:HGNC Symbol;Acc:HGNC:51109]

Location

Chromosome 2: 186,033,516-186,178,635 reverse strand.

About this transcript

This transcript has 10 exons and maps to 288 oligo probes.

Gene

This transcript is a product of gene ENSG00000237877.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000738363.1	LINC01473-225	1965	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655126.2	LINC01473-204	2301	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738374.1	LINC01473-236	2256	No protein	-	lncRNA	-	-
ENST00000738362.1	LINC01473-224	2229	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738423.1	LINC01473-285	2125	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738422.1	LINC01473-284	2091	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738430.1	LINC01473-292	1996	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668985.2	LINC01473-217	1932	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738366.1	LINC01473-228	1912	No protein	-	lncRNA	-	-
ENST00000738370.1	LINC01473-232	1689	No protein	-	lncRNA	-	-
ENST00000738376.1	LINC01473-238	1632	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738436.1	LINC01473-298	1604	No protein	-	lncRNA	-	-
ENST00000667983.1	LINC01473-215	1598	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667839.1	LINC01473-214	1590	No protein	-	lncRNA	-	-
ENST00000658990.1	LINC01473-207	1556	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738365.1	LINC01473-227	1552	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668977.1	LINC01473-216	1529	No protein	-	lncRNA	-	-
ENST00000665629.2	LINC01473-211	1521	No protein	-	lncRNA	-	-
ENST00000738380.1	LINC01473-242	1520	No protein	-	lncRNA	-	-
ENST00000738385.1	LINC01473-247	1509	No protein	-	lncRNA	-	-
ENST00000738375.1	LINC01473-237	1506	No protein	-	lncRNA	-	-
ENST00000738431.1	LINC01473-293	1448	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658984.1	LINC01473-206	1395	No protein	-	lncRNA	-	-
ENST00000738437.1	LINC01473-299	1394	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738384.1	LINC01473-246	1390	No protein	-	lncRNA	-	-
ENST00000738439.1	LINC01473-301	1368	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659351.1	LINC01473-208	1358	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669598.1	LINC01473-218	1347	No protein	-	lncRNA	-	-
ENST00000738433.1	LINC01473-295	1336	No protein	-	lncRNA	-	-
ENST00000670612.1	LINC01473-219	1307	No protein	-	lncRNA	-	-
ENST00000671116.1	LINC01473-220	1287	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738379.1	LINC01473-241	1279	No protein	-	lncRNA	-	-
ENST00000738364.1	LINC01473-226	1223	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738382.1	LINC01473-244	1207	No protein	-	lncRNA	-	-
ENST00000701778.2	LINC01473-222	1206	No protein	-	lncRNA	-	-
ENST00000659769.1	LINC01473-209	1190	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656786.2	LINC01473-205	1149	No protein	-	lncRNA	-	-
ENST00000667056.1	LINC01473-213	1088	No protein	-	lncRNA	-	-
ENST00000456653.6	LINC01473-203	1079	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000666677.1	LINC01473-212	1074	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738373.1	LINC01473-235	1056	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738377.1	LINC01473-239	1052	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738383.1	LINC01473-245	1040	No protein	-	lncRNA	-	-
ENST00000661574.1	LINC01473-210	1031	No protein	-	lncRNA	-	-
ENST00000738418.1	LINC01473-280	1008	No protein	-	lncRNA	-	-
ENST00000738368.1	LINC01473-230	989	No protein	-	lncRNA	-	-
ENST00000738381.1	LINC01473-243	987	No protein	-	lncRNA	-	-
ENST00000738424.1	LINC01473-286	959	No protein	-	lncRNA	-	-
ENST00000738386.1	LINC01473-248	958	No protein	-	lncRNA	-	-
ENST00000738394.1	LINC01473-256	952	No protein	-	lncRNA	-	-
ENST00000738408.1	LINC01473-270	950	No protein	-	lncRNA	-	-
ENST00000738387.1	LINC01473-249	931	No protein	-	lncRNA	-	-
ENST00000738397.1	LINC01473-259	919	No protein	-	lncRNA	-	-
ENST00000703419.1	LINC01473-223	904	No protein	-	lncRNA	-	-
ENST00000738404.1	LINC01473-266	901	No protein	-	lncRNA	-	-
ENST00000738409.1	LINC01473-271	892	No protein	-	lncRNA	-	-
ENST00000738421.1	LINC01473-283	892	No protein	-	lncRNA	-	-
ENST00000738372.1	LINC01473-234	880	No protein	-	lncRNA	-	-
ENST00000738414.1	LINC01473-276	877	No protein	-	lncRNA	-	-
ENST00000738413.1	LINC01473-275	872	No protein	-	lncRNA	-	-
ENST00000738415.1	LINC01473-277	858	No protein	-	lncRNA	-	-
ENST00000427108.6	LINC01473-202	849	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000738429.1	LINC01473-291	842	No protein	-	lncRNA	-	-
ENST00000738412.1	LINC01473-274	839	No protein	-	lncRNA	-	-
ENST00000738420.1	LINC01473-282	830	No protein	-	lncRNA	-	-
ENST00000738371.1	LINC01473-233	822	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738411.1	LINC01473-273	811	No protein	-	lncRNA	-	-
ENST00000738419.1	LINC01473-281	809	No protein	-	lncRNA	-	-
ENST00000738367.1	LINC01473-229	797	No protein	-	lncRNA	-	-
ENST00000738441.1	LINC01473-303	787	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738378.1	LINC01473-240	779	No protein	-	lncRNA	-	-
ENST00000738402.1	LINC01473-264	774	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738391.1	LINC01473-253	746	No protein	-	lncRNA	-	-
ENST00000738410.1	LINC01473-272	746	No protein	-	lncRNA	-	-
ENST00000738393.1	LINC01473-255	744	No protein	-	lncRNA	-	-
ENST00000738435.1	LINC01473-297	744	No protein	-	lncRNA	-	-
ENST00000738399.1	LINC01473-261	743	No protein	-	lncRNA	-	-
ENST00000738426.1	LINC01473-288	736	No protein	-	lncRNA	-	-
ENST00000738406.1	LINC01473-268	734	No protein	-	lncRNA	-	-
ENST00000738438.1	LINC01473-300	726	No protein	-	lncRNA	-	-
ENST00000738390.1	LINC01473-252	724	No protein	-	lncRNA	-	-
ENST00000738369.1	LINC01473-231	714	No protein	-	lncRNA	-	-
ENST00000738398.1	LINC01473-260	709	No protein	-	lncRNA	-	-
ENST00000738440.1	LINC01473-302	701	No protein	-	lncRNA	-	-
ENST00000738400.1	LINC01473-262	700	No protein	-	lncRNA	-	-
ENST00000738434.1	LINC01473-296	687	No protein	-	lncRNA	-	-
ENST00000671599.1	LINC01473-221	675	No protein	-	lncRNA	-	-
ENST00000419719.3	LINC01473-201	672	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000738392.1	LINC01473-254	671	No protein	-	lncRNA	-	-
ENST00000738389.1	LINC01473-251	651	No protein	-	lncRNA	-	-
ENST00000738407.1	LINC01473-269	650	No protein	-	lncRNA	-	-
ENST00000738388.1	LINC01473-250	641	No protein	-	lncRNA	-	-
ENST00000738425.1	LINC01473-287	637	No protein	-	lncRNA	-	-
ENST00000738395.1	LINC01473-257	636	No protein	-	lncRNA	-	-
ENST00000738428.1	LINC01473-290	634	No protein	-	lncRNA	-	-
ENST00000738446.1	LINC01473-308	610	No protein	-	lncRNA	-	-
ENST00000738403.1	LINC01473-265	605	No protein	-	lncRNA	-	-
ENST00000738427.1	LINC01473-289	590	No protein	-	lncRNA	-	-
ENST00000738432.1	LINC01473-294	559	No protein	-	lncRNA	-	-
ENST00000738447.1	LINC01473-309	558	No protein	-	lncRNA	-	-
ENST00000738416.1	LINC01473-278	528	No protein	-	lncRNA	-	-
ENST00000738405.1	LINC01473-267	513	No protein	-	lncRNA	-	-
ENST00000738417.1	LINC01473-279	490	No protein	-	lncRNA	-	-
ENST00000738401.1	LINC01473-263	481	No protein	-	lncRNA	-	-
ENST00000738445.1	LINC01473-307	473	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738396.1	LINC01473-258	469	No protein	-	lncRNA	-	-
ENST00000738443.1	LINC01473-305	446	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000738442.1	LINC01473-304	428	No protein	-	lncRNA	-	-
ENST00000738444.1	LINC01473-306	406	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 1,287 bps,

Version

ENST00000671116.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000671116.1 LINC01473-220

Summary

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Transcript: ENST00000671116.1 LINC01473-220

Summary

About Us

Get help

Our sister sites

Follow us