Transcript: ENST00000670916.1 LINC02347-227

Description

long intergenic non-protein coding RNA 2347 [Source:HGNC Symbol;Acc:HGNC:53269]

Location

Chromosome 12: 126,438,837-126,449,250 forward strand.

About this transcript

This transcript has 4 exons and maps to 72 oligo probes.

Gene

This transcript is a product of gene ENSG00000214043.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000397346.7	LINC02347-201	2458	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000653837.1	LINC02347-207	2543	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664858.1	LINC02347-221	2496	No protein	-	lncRNA	-	-
ENST00000655565.1	LINC02347-211	2046	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661190.1	LINC02347-214	1949	No protein	-	lncRNA	-	-
ENST00000670226.1	LINC02347-226	1901	No protein	-	lncRNA	-	-
ENST00000654221.1	LINC02347-208	1894	No protein	-	lncRNA	-	-
ENST00000653244.1	LINC02347-206	1814	No protein	-	lncRNA	-	-
ENST00000539969.5	LINC02347-202	1802	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000663153.1	LINC02347-217	1749	No protein	-	lncRNA	-	-
ENST00000657054.1	LINC02347-213	1703	No protein	-	lncRNA	-	-
ENST00000545767.5	LINC02347-205	1563	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000668646.1	LINC02347-225	1549	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665686.1	LINC02347-223	1486	No protein	-	lncRNA	-	-
ENST00000665178.1	LINC02347-222	1482	No protein	-	lncRNA	-	-
ENST00000668022.1	LINC02347-224	1460	No protein	-	lncRNA	-	-
ENST00000540774.2	LINC02347-203	1442	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000664729.1	LINC02347-220	1393	No protein	-	lncRNA	-	-
ENST00000654279.1	LINC02347-209	1392	No protein	-	lncRNA	-	-
ENST00000656915.1	LINC02347-212	1306	No protein	-	lncRNA	-	-
ENST00000662173.1	LINC02347-216	1280	No protein	-	lncRNA	-	-
ENST00000670916.1	LINC02347-227	1257	No protein	-	lncRNA	-	-
ENST00000655151.1	LINC02347-210	1204	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661524.1	LINC02347-215	1042	No protein	-	lncRNA	-	-
ENST00000663607.1	LINC02347-219	833	No protein	-	lncRNA	-	-
ENST00000663560.1	LINC02347-218	808	No protein	-	lncRNA	-	-
ENST00000544759.5	LINC02347-204	742	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,257 bps,

Version

ENST00000670916.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000670916.1 LINC02347-227

Summary

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Transcript: ENST00000670916.1 LINC02347-227

Summary

About Us

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