Transcript: ENST00000669976.1 SNHG11-237

Description

small nucleolar RNA host gene 11 [Source:HGNC Symbol;Acc:HGNC:25046]

Gene Synonyms

C20ORF198, LINC00101

Location

Chromosome 20: 38,446,700-38,450,940 forward strand.

About this transcript

This transcript has 3 exons and maps to 635 oligo probes.

Gene

This transcript is a product of gene ENSG00000174365.23 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000400436.8	SNHG11-202	2671	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000418383.3	SNHG11-203	1709	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000483342.9	SNHG11-215	1594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000453698.7	SNHG11-213	1339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000670898.4	SNHG11-239	1196	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000437028.5	SNHG11-208	1169	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000659148.1	SNHG11-222	1073	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000663763.1	SNHG11-229	4108	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659610.1	SNHG11-223	3513	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669976.1	SNHG11-237	3118	No protein	-	lncRNA	-	-
ENST00000661733.1	SNHG11-228	2683	No protein	-	lncRNA	-	-
ENST00000724773.1	SNHG11-275	2674	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661078.1	SNHG11-226	2624	No protein	-	lncRNA	-	-
ENST00000660884.1	SNHG11-225	2458	No protein	-	lncRNA	-	-
ENST00000670145.1	SNHG11-238	2151	No protein	-	lncRNA	-	-
ENST00000660281.3	SNHG11-224	2104	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661378.1	SNHG11-227	2020	No protein	-	lncRNA	-	-
ENST00000666813.3	SNHG11-232	1987	No protein	-	lncRNA	-	-
ENST00000724764.1	SNHG11-266	1848	No protein	-	lncRNA	-	-
ENST00000724777.1	SNHG11-279	1771	No protein	-	lncRNA	-	-
ENST00000669207.2	SNHG11-235	1738	No protein	-	lncRNA	-	-
ENST00000724761.1	SNHG11-263	1728	No protein	-	lncRNA	-	-
ENST00000724760.1	SNHG11-262	1701	No protein	-	lncRNA	-	-
ENST00000669338.3	SNHG11-236	1649	No protein	-	lncRNA	-	-
ENST00000693500.2	SNHG11-246	1619	No protein	-	lncRNA	-	-
ENST00000724784.1	SNHG11-286	1584	No protein	-	lncRNA	-	-
ENST00000701247.2	SNHG11-248	1537	No protein	-	lncRNA	-	-
ENST00000724782.1	SNHG11-284	1370	No protein	-	lncRNA	-	-
ENST00000724793.1	SNHG11-295	1365	No protein	-	lncRNA	-	-
ENST00000666350.2	SNHG11-231	1354	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000442419.3	SNHG11-210	1318	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000656502.1	SNHG11-217	1312	No protein	-	lncRNA	-	-
ENST00000432153.7	SNHG11-206	1308	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000724770.1	SNHG11-272	1299	No protein	-	lncRNA	-	-
ENST00000658222.1	SNHG11-221	1280	No protein	-	lncRNA	-	-
ENST00000724757.1	SNHG11-259	1269	No protein	-	lncRNA	-	-
ENST00000656824.1	SNHG11-219	1229	No protein	-	lncRNA	-	-
ENST00000666020.2	SNHG11-230	1211	No protein	-	lncRNA	-	-
ENST00000724755.1	SNHG11-257	1211	No protein	-	lncRNA	-	-
ENST00000724767.1	SNHG11-269	1211	No protein	-	lncRNA	-	-
ENST00000724795.1	SNHG11-297	1197	No protein	-	lncRNA	-	-
ENST00000657911.2	SNHG11-220	1190	No protein	-	lncRNA	-	-
ENST00000434729.9	SNHG11-207	1174	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000724779.1	SNHG11-281	1161	No protein	-	lncRNA	-	-
ENST00000692643.3	SNHG11-245	1156	No protein	-	lncRNA	-	-
ENST00000656427.1	SNHG11-216	1156	No protein	-	lncRNA	-	-
ENST00000724772.1	SNHG11-274	1150	No protein	-	lncRNA	-	-
ENST00000724768.1	SNHG11-270	1150	No protein	-	lncRNA	-	-
ENST00000724762.1	SNHG11-264	1150	No protein	-	lncRNA	-	-
ENST00000724774.1	SNHG11-276	1145	No protein	-	lncRNA	-	-
ENST00000656815.2	SNHG11-218	1141	No protein	-	lncRNA	-	-
ENST00000421599.8	SNHG11-205	1132	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000724759.1	SNHG11-261	1123	No protein	-	lncRNA	-	-
ENST00000724796.1	SNHG11-298	1106	No protein	-	lncRNA	-	-
ENST00000724766.1	SNHG11-268	1095	No protein	-	lncRNA	-	-
ENST00000724758.1	SNHG11-260	1090	No protein	-	lncRNA	-	-
ENST00000667760.3	SNHG11-233	1085	No protein	-	lncRNA	-	-
ENST00000440918.7	SNHG11-209	1083	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000724769.1	SNHG11-271	1077	No protein	-	lncRNA	-	-
ENST00000724792.1	SNHG11-294	1072	No protein	-	lncRNA	-	-
ENST00000724763.1	SNHG11-265	1070	No protein	-	lncRNA	-	-
ENST00000724790.1	SNHG11-292	1045	No protein	-	lncRNA	-	-
ENST00000724776.1	SNHG11-278	1044	No protein	-	lncRNA	-	-
ENST00000689738.2	SNHG11-242	1042	No protein	-	lncRNA	-	-
ENST00000724794.1	SNHG11-296	1042	No protein	-	lncRNA	-	-
ENST00000669083.3	SNHG11-234	1040	No protein	-	lncRNA	-	-
ENST00000689733.2	SNHG11-241	1032	No protein	-	lncRNA	-	-
ENST00000702328.2	SNHG11-253	1015	No protein	-	lncRNA	-	-
ENST00000359074.10	SNHG11-201	1015	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000724791.1	SNHG11-293	1002	No protein	-	lncRNA	-	-
ENST00000688319.3	SNHG11-240	1001	No protein	-	lncRNA	-	-
ENST00000724765.1	SNHG11-267	1001	No protein	-	lncRNA	-	-
ENST00000724778.1	SNHG11-280	1000	No protein	-	lncRNA	-	-
ENST00000724775.1	SNHG11-277	993	No protein	-	lncRNA	-	-
ENST00000724780.1	SNHG11-282	991	No protein	-	lncRNA	-	-
ENST00000449351.7	SNHG11-212	988	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000724786.1	SNHG11-288	963	No protein	-	lncRNA	-	-
ENST00000724785.1	SNHG11-287	955	No protein	-	lncRNA	-	-
ENST00000724756.1	SNHG11-258	951	No protein	-	lncRNA	-	-
ENST00000724787.1	SNHG11-289	944	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000724783.1	SNHG11-285	943	No protein	-	lncRNA	-	-
ENST00000692199.2	SNHG11-244	935	No protein	-	lncRNA	-	-
ENST00000701721.2	SNHG11-251	927	No protein	-	lncRNA	-	-
ENST00000724771.1	SNHG11-273	907	No protein	-	lncRNA	-	-
ENST00000724753.1	SNHG11-255	895	No protein	-	lncRNA	-	-
ENST00000701214.2	SNHG11-247	894	No protein	-	lncRNA	-	-
ENST00000701784.2	SNHG11-252	892	No protein	-	lncRNA	-	-
ENST00000724789.1	SNHG11-291	882	No protein	-	lncRNA	-	-
ENST00000457218.5	SNHG11-214	880	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000724752.1	SNHG11-254	846	No protein	-	lncRNA	-	-
ENST00000724781.1	SNHG11-283	842	No protein	-	lncRNA	-	-
ENST00000420006.6	SNHG11-204	841	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000724788.1	SNHG11-290	816	No protein	-	lncRNA	-	-
ENST00000701309.1	SNHG11-249	810	No protein	-	lncRNA	-	-
ENST00000691928.1	SNHG11-243	806	No protein	-	lncRNA	-	-
ENST00000724754.1	SNHG11-256	795	No protein	-	lncRNA	-	-
ENST00000724800.1	SNHG11-302	793	No protein	-	lncRNA	-	-
ENST00000444816.2	SNHG11-211	708	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000724802.1	SNHG11-304	679	No protein	-	lncRNA	-	-
ENST00000724798.1	SNHG11-300	639	No protein	-	lncRNA	-	-
ENST00000724799.1	SNHG11-301	630	No protein	-	lncRNA	-	-
ENST00000724803.1	SNHG11-305	625	No protein	-	lncRNA	-	-
ENST00000724797.1	SNHG11-299	616	No protein	-	lncRNA	-	-
ENST00000724804.1	SNHG11-306	616	No protein	-	lncRNA	-	-
ENST00000724801.1	SNHG11-303	563	No protein	-	lncRNA	-	-
ENST00000701488.2	SNHG11-250	420	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 3,118 bps,

Version

ENST00000669976.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000669976.1 SNHG11-237

Summary

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Transcript: ENST00000669976.1 SNHG11-237

Summary

About Us

Get help

Our sister sites

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