Transcript: ENST00000669947.1 LINC01229-240

Description

long intergenic non-protein coding RNA 1229 [Source:HGNC Symbol;Acc:HGNC:49682]

Gene Synonyms

TCONS_00024480

Location

Chromosome 16: 79,676,091-79,807,606 forward strand.

About this transcript

This transcript has 8 exons and maps to 149 oligo probes.

Gene

This transcript is a product of gene ENSG00000260876.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000661087.1	LINC01229-217	2089	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000766709.1	LINC01229-244	3076	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654418.2	LINC01229-209	2933	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669543.1	LINC01229-236	2468	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665206.1	LINC01229-226	2179	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658021.1	LINC01229-211	2017	No protein	-	lncRNA	-	-
ENST00000667860.1	LINC01229-230	1871	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660492.1	LINC01229-214	1745	No protein	-	lncRNA	-	-
ENST00000668170.1	LINC01229-231	1719	No protein	-	lncRNA	-	-
ENST00000670230.1	LINC01229-241	1696	No protein	-	lncRNA	-	-
ENST00000666087.2	LINC01229-228	1646	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664391.2	LINC01229-222	1629	No protein	-	lncRNA	-	-
ENST00000663559.1	LINC01229-219	1628	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654126.1	LINC01229-208	1620	No protein	-	lncRNA	-	-
ENST00000665592.1	LINC01229-227	1594	No protein	-	lncRNA	-	-
ENST00000563360.6	LINC01229-202	1582	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000663905.1	LINC01229-221	1551	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653629.1	LINC01229-207	1545	No protein	-	lncRNA	-	-
ENST00000658102.1	LINC01229-212	1498	No protein	-	lncRNA	-	-
ENST00000561510.5	LINC01229-201	1494	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000669736.1	LINC01229-239	1475	No protein	-	lncRNA	-	-
ENST00000658367.1	LINC01229-213	1419	No protein	-	lncRNA	-	-
ENST00000660867.1	LINC01229-215	1418	No protein	-	lncRNA	-	-
ENST00000669642.1	LINC01229-238	1393	No protein	-	lncRNA	-	-
ENST00000766715.1	LINC01229-249	1362	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663824.1	LINC01229-220	1333	No protein	-	lncRNA	-	-
ENST00000766717.1	LINC01229-251	1319	No protein	-	lncRNA	-	-
ENST00000766716.1	LINC01229-250	1284	No protein	-	lncRNA	-	-
ENST00000669947.1	LINC01229-240	1231	No protein	-	lncRNA	-	-
ENST00000661887.1	LINC01229-218	1216	No protein	-	lncRNA	-	-
ENST00000766712.1	LINC01229-247	1192	No protein	-	lncRNA	-	-
ENST00000668552.1	LINC01229-234	1174	No protein	-	lncRNA	-	-
ENST00000567665.2	LINC01229-203	1164	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000667006.2	LINC01229-229	1144	No protein	-	lncRNA	-	-
ENST00000653222.1	LINC01229-206	1128	No protein	-	lncRNA	-	-
ENST00000668311.1	LINC01229-233	1111	No protein	-	lncRNA	-	-
ENST00000671582.1	LINC01229-243	1110	No protein	-	lncRNA	-	-
ENST00000766711.1	LINC01229-246	1054	No protein	-	lncRNA	-	-
ENST00000664812.1	LINC01229-224	1052	No protein	-	lncRNA	-	-
ENST00000660877.1	LINC01229-216	1052	No protein	-	lncRNA	-	-
ENST00000766714.1	LINC01229-248	1033	No protein	-	lncRNA	-	-
ENST00000669552.1	LINC01229-237	1024	No protein	-	lncRNA	-	-
ENST00000656256.1	LINC01229-210	1011	No protein	-	lncRNA	-	-
ENST00000668234.2	LINC01229-232	1007	No protein	-	lncRNA	-	-
ENST00000569164.2	LINC01229-205	997	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000664722.1	LINC01229-223	925	No protein	-	lncRNA	-	-
ENST00000668897.2	LINC01229-235	884	No protein	-	lncRNA	-	-
ENST00000568751.2	LINC01229-204	843	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000766710.1	LINC01229-245	794	No protein	-	lncRNA	-	-
ENST00000670441.1	LINC01229-242	774	No protein	-	lncRNA	-	-
ENST00000665091.2	LINC01229-225	670	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 1,231 bps,

Version

ENST00000669947.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000669947.1 LINC01229-240

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Transcript: ENST00000669947.1 LINC01229-240

Summary

About Us

Get help

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