Transcript: ENST00000669751.1 SILC1-228

Description

sciatic injury induced lincRNA upregulator of SOX11 [Source:HGNC Symbol;Acc:HGNC:26403]

Gene Synonyms

FLJ30594, LINC01105, LOC150622

Location

Chromosome 2: 5,932,791-5,984,887 forward strand.

About this transcript

This transcript has 5 exons and maps to 275 oligo probes.

Gene

This transcript is a product of gene ENSG00000232044.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000625018.1	SILC1-207	3292	No protein	-	TEC	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000747556.1	SILC1-237	1002	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659985.2	SILC1-214	6026	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659164.1	SILC1-213	5937	No protein	-	lncRNA	-	-
ENST00000668005.1	SILC1-226	5855	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670048.1	SILC1-230	5246	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667433.1	SILC1-225	4027	No protein	-	lncRNA	-	-
ENST00000654655.1	SILC1-209	3614	No protein	-	lncRNA	-	-
ENST00000665790.1	SILC1-223	3591	No protein	-	lncRNA	-	-
ENST00000670820.1	SILC1-232	3454	No protein	-	lncRNA	-	-
ENST00000665307.1	SILC1-222	3401	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000747558.1	SILC1-239	3383	No protein	-	lncRNA	-	-
ENST00000431188.1	SILC1-203	3329	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000660326.2	SILC1-216	3304	No protein	-	lncRNA	-	-
ENST00000450794.4	SILC1-205	3302	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000391666.3	SILC1-201	3269	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000444416.2	SILC1-204	3243	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000663243.1	SILC1-218	3085	No protein	-	lncRNA	-	-
ENST00000654025.1	SILC1-208	2962	No protein	-	lncRNA	-	-
ENST00000669751.1	SILC1-228	2949	No protein	-	lncRNA	-	-
ENST00000670914.1	SILC1-233	2946	No protein	-	lncRNA	-	-
ENST00000747576.1	SILC1-257	2525	No protein	-	lncRNA	-	-
ENST00000664097.2	SILC1-220	2514	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000431182.3	SILC1-202	2443	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000747562.1	SILC1-243	2422	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660066.2	SILC1-215	2360	No protein	-	lncRNA	-	-
ENST00000666985.1	SILC1-224	2276	No protein	-	lncRNA	-	-
ENST00000747580.1	SILC1-261	2099	No protein	-	lncRNA	-	-
ENST00000747559.1	SILC1-240	2002	No protein	-	lncRNA	-	-
ENST00000747566.1	SILC1-247	1929	No protein	-	lncRNA	-	-
ENST00000658702.1	SILC1-212	1878	No protein	-	lncRNA	-	-
ENST00000664766.1	SILC1-221	1866	No protein	-	lncRNA	-	-
ENST00000670925.2	SILC1-234	1808	No protein	-	lncRNA	-	-
ENST00000663649.1	SILC1-219	1803	No protein	-	lncRNA	-	-
ENST00000747578.1	SILC1-259	1744	No protein	-	lncRNA	-	-
ENST00000747563.1	SILC1-244	1564	No protein	-	lncRNA	-	-
ENST00000670583.1	SILC1-231	1468	No protein	-	lncRNA	-	-
ENST00000747569.1	SILC1-250	1438	No protein	-	lncRNA	-	-
ENST00000456327.1	SILC1-206	1434	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000690744.1	SILC1-236	1431	No protein	-	lncRNA	-	-
ENST00000669975.1	SILC1-229	1356	No protein	-	lncRNA	-	-
ENST00000747577.1	SILC1-258	1280	No protein	-	lncRNA	-	-
ENST00000747582.1	SILC1-263	1214	No protein	-	lncRNA	-	-
ENST00000661262.1	SILC1-217	1199	No protein	-	lncRNA	-	-
ENST00000747560.1	SILC1-241	1114	No protein	-	lncRNA	-	-
ENST00000747581.1	SILC1-262	1082	No protein	-	lncRNA	-	-
ENST00000654672.2	SILC1-210	1060	No protein	-	lncRNA	-	-
ENST00000747557.1	SILC1-238	1055	No protein	-	lncRNA	-	-
ENST00000654857.1	SILC1-211	957	No protein	-	lncRNA	-	-
ENST00000668795.1	SILC1-227	943	No protein	-	lncRNA	-	-
ENST00000747565.1	SILC1-246	923	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000747572.1	SILC1-253	836	No protein	-	lncRNA	-	-
ENST00000747573.1	SILC1-254	811	No protein	-	lncRNA	-	-
ENST00000747579.1	SILC1-260	774	No protein	-	lncRNA	-	-
ENST00000747570.1	SILC1-251	760	No protein	-	lncRNA	-	-
ENST00000747567.1	SILC1-248	745	No protein	-	lncRNA	-	-
ENST00000747574.1	SILC1-255	728	No protein	-	lncRNA	-	-
ENST00000747571.1	SILC1-252	714	No protein	-	lncRNA	-	-
ENST00000747575.1	SILC1-256	669	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000747561.1	SILC1-242	652	No protein	-	lncRNA	-	-
ENST00000747564.1	SILC1-245	637	No protein	-	lncRNA	-	-
ENST00000747568.1	SILC1-249	608	No protein	-	lncRNA	-	-
ENST00000687697.2	SILC1-235	527	No protein	-	lncRNA	-	-
ENST00000747583.1	SILC1-264	392	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,949 bps,

Version

ENST00000669751.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000669751.1 SILC1-228

Summary

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Transcript: ENST00000669751.1 SILC1-228

Summary

About Us

Get help

Our sister sites

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