Transcript: ENST00000669453.1 LERFS-219

Description

lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting [Source:HGNC Symbol;Acc:HGNC:51182]

Location

Chromosome 9: 62,867,874-62,870,079 reverse strand.

About this transcript

This transcript has 2 exons and maps to 250 oligo probes.

Gene

This transcript is a product of gene ENSG00000234665.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000662817.1	LERFS-213	1969	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000654882.2	LERFS-211	2522	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000591993.6	LERFS-206	1925	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000665356.2	LERFS-215	1841	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000849141.1	LERFS-221	1840	No protein	-	lncRNA	-	-
ENST00000445604.8	LERFS-202	1787	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000849168.1	LERFS-248	1772	No protein	-	lncRNA	-	-
ENST00000849142.1	LERFS-222	1748	No protein	-	lncRNA	-	-
ENST00000667498.1	LERFS-218	1743	No protein	-	lncRNA	-	-
ENST00000666775.1	LERFS-216	1730	No protein	-	lncRNA	-	-
ENST00000849158.1	LERFS-238	1715	No protein	-	lncRNA	-	-
ENST00000586625.6	LERFS-204	1629	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000654225.1	LERFS-210	1603	No protein	-	lncRNA	-	-
ENST00000669453.1	LERFS-219	1250	No protein	-	lncRNA	-	-
ENST00000849152.1	LERFS-232	1245	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000849575.1	LERFS-268	1182	No protein	-	lncRNA	-	-
ENST00000653936.2	LERFS-209	1077	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000849145.1	LERFS-225	1038	No protein	-	lncRNA	-	-
ENST00000849144.1	LERFS-224	1036	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000849143.1	LERFS-223	1033	No protein	-	lncRNA	-	-
ENST00000438699.6	LERFS-201	1031	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000670636.1	LERFS-220	1028	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000849149.1	LERFS-229	1026	No protein	-	lncRNA	-	-
ENST00000849177.1	LERFS-257	992	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000590130.1	LERFS-205	980	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000667349.1	LERFS-217	936	No protein	-	lncRNA	-	-
ENST00000609749.2	LERFS-207	927	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000849146.1	LERFS-226	917	No protein	-	lncRNA	-	-
ENST00000849167.1	LERFS-247	897	No protein	-	lncRNA	-	-
ENST00000849159.1	LERFS-239	877	No protein	-	lncRNA	-	-
ENST00000585533.3	LERFS-203	836	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000849169.1	LERFS-249	822	No protein	-	lncRNA	-	-
ENST00000658257.1	LERFS-212	777	No protein	-	lncRNA	-	-
ENST00000849155.1	LERFS-235	766	No protein	-	lncRNA	-	-
ENST00000664229.2	LERFS-214	752	No protein	-	lncRNA	-	-
ENST00000612590.1	LERFS-208	716	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000849183.1	LERFS-263	701	No protein	-	lncRNA	-	-
ENST00000849147.1	LERFS-227	698	No protein	-	lncRNA	-	-
ENST00000849151.1	LERFS-231	692	No protein	-	lncRNA	-	-
ENST00000849178.1	LERFS-258	687	No protein	-	lncRNA	-	-
ENST00000849179.1	LERFS-259	685	No protein	-	lncRNA	-	-
ENST00000849176.1	LERFS-256	679	No protein	-	lncRNA	-	-
ENST00000849160.1	LERFS-240	676	No protein	-	lncRNA	-	-
ENST00000849173.1	LERFS-253	662	No protein	-	lncRNA	-	-
ENST00000849184.1	LERFS-264	659	No protein	-	lncRNA	-	-
ENST00000849171.1	LERFS-251	645	No protein	-	lncRNA	-	-
ENST00000849170.1	LERFS-250	630	No protein	-	lncRNA	-	-
ENST00000849164.1	LERFS-244	608	No protein	-	lncRNA	-	-
ENST00000849165.1	LERFS-245	575	No protein	-	lncRNA	-	-
ENST00000849150.1	LERFS-230	574	No protein	-	lncRNA	-	-
ENST00000849154.1	LERFS-234	545	No protein	-	lncRNA	-	-
ENST00000849180.1	LERFS-260	533	No protein	-	lncRNA	-	-
ENST00000849185.1	LERFS-265	502	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000849161.1	LERFS-241	472	No protein	-	lncRNA	-	-
ENST00000849163.1	LERFS-243	472	No protein	-	lncRNA	-	-
ENST00000849157.1	LERFS-237	448	No protein	-	lncRNA	-	-
ENST00000849162.1	LERFS-242	444	No protein	-	lncRNA	-	-
ENST00000849172.1	LERFS-252	433	No protein	-	lncRNA	-	-
ENST00000849166.1	LERFS-246	432	No protein	-	lncRNA	-	-
ENST00000849148.1	LERFS-228	431	No protein	-	lncRNA	-	-
ENST00000849174.1	LERFS-254	431	No protein	-	lncRNA	-	-
ENST00000849182.1	LERFS-262	419	No protein	-	lncRNA	-	-
ENST00000849175.1	LERFS-255	415	No protein	-	lncRNA	-	-
ENST00000849181.1	LERFS-261	403	No protein	-	lncRNA	-	-
ENST00000849156.1	LERFS-236	392	No protein	-	lncRNA	-	-
ENST00000849153.1	LERFS-233	365	No protein	-	lncRNA	-	-
ENST00000849187.1	LERFS-267	330	No protein	-	lncRNA	-	-
ENST00000849186.1	LERFS-266	282	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,250 bps,

Version

ENST00000669453.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000669453.1 LERFS-219

Summary

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Transcript: ENST00000669453.1 LERFS-219

Summary

About Us

Get help

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