Transcript: ENST00000669389.1 LINC02201-207

Description

long intergenic non-protein coding RNA 2201 [Source:HGNC Symbol;Acc:HGNC:53067]

Location

Chromosome 5: 122,714,897-122,730,641 reverse strand.

About this transcript

This transcript has 5 exons and maps to 103 oligo probes.

Gene

This transcript is a product of gene ENSG00000251538.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000719844.1	LINC02201-208	788	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000511194.5	LINC02201-202	1651	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000649085.1	LINC02201-204	1506	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719851.1	LINC02201-215	1282	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656860.1	LINC02201-205	1243	No protein	-	lncRNA	-	-
ENST00000719853.1	LINC02201-217	1133	No protein	-	lncRNA	-	-
ENST00000514657.2	LINC02201-203	1075	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000669389.1	LINC02201-207	1037	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719846.1	LINC02201-210	884	No protein	-	lncRNA	-	-
ENST00000659891.1	LINC02201-206	868	No protein	-	lncRNA	-	-
ENST00000719849.1	LINC02201-213	732	No protein	-	lncRNA	-	-
ENST00000719845.1	LINC02201-209	713	No protein	-	lncRNA	-	-
ENST00000719847.1	LINC02201-211	677	No protein	-	lncRNA	-	-
ENST00000719848.1	LINC02201-212	649	No protein	-	lncRNA	-	-
ENST00000719850.1	LINC02201-214	641	No protein	-	lncRNA	-	-
ENST00000719852.1	LINC02201-216	506	No protein	-	lncRNA	-	-
ENST00000508992.1	LINC02201-201	468	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,037 bps,

Version

ENST00000669389.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000669389.1 LINC02201-207

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Transcript: ENST00000669389.1 LINC02201-207

Summary

About Us

Get help

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