Transcript: ENST00000668974.2 HCG18-267

Description

HLA complex group 18 [Source:HGNC Symbol;Acc:HGNC:31337]

Gene Synonyms

EM:AB014087.1, FLJ25550, FLJ31598

Location

Chromosome 6: 30,286,806-30,326,856 reverse strand.

About this transcript

This transcript has 4 exons and maps to 1498 oligo probes.

Gene

This transcript is a product of gene ENSG00000231074.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000844410.1	HCG18-277	533	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000664861.1	HCG18-263	7267	No protein	-	lncRNA	-	-
ENST00000659132.1	HCG18-259	7230	No protein	-	lncRNA	-	-
ENST00000653541.2	HCG18-252	7206	No protein	-	lncRNA	-	-
ENST00000668974.2	HCG18-267	7100	No protein	-	lncRNA	-	-
ENST00000657247.1	HCG18-256	7011	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660593.2	HCG18-262	6779	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654915.1	HCG18-253	6547	No protein	-	lncRNA	-	-
ENST00000658695.2	HCG18-258	6545	No protein	-	lncRNA	-	-
ENST00000426882.6	HCG18-235	5050	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000666294.1	HCG18-265	4929	No protein	-	lncRNA	-	-
ENST00000444126.5	HCG18-237	4605	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000602290.2	HCG18-243	4601	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000449544.6	HCG18-238	4518	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000454129.5	HCG18-240	4433	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000654996.1	HCG18-254	4356	No protein	-	lncRNA	-	-
ENST00000657595.2	HCG18-257	4058	No protein	-	lncRNA	-	-
ENST00000653301.1	HCG18-251	4017	No protein	-	lncRNA	-	-
ENST00000602861.6	HCG18-250	3981	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000665953.1	HCG18-264	3898	No protein	-	lncRNA	-	-
ENST00000670071.1	HCG18-269	3812	No protein	-	lncRNA	-	-
ENST00000602319.2	HCG18-244	3772	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000659563.1	HCG18-260	3639	No protein	-	lncRNA	-	-
ENST00000659836.1	HCG18-261	3406	No protein	-	lncRNA	-	-
ENST00000670397.1	HCG18-270	3040	No protein	-	lncRNA	-	-
ENST00000669374.1	HCG18-268	3028	No protein	-	lncRNA	-	-
ENST00000602516.1	HCG18-246	2890	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000668243.1	HCG18-266	2862	No protein	-	lncRNA	-	-
ENST00000686575.3	HCG18-271	2812	No protein	-	lncRNA	-	-
ENST00000844433.1	HCG18-300	2675	No protein	-	lncRNA	-	-
ENST00000844431.1	HCG18-298	2646	No protein	-	lncRNA	-	-
ENST00000844444.1	HCG18-311	2645	No protein	-	lncRNA	-	-
ENST00000844437.1	HCG18-304	2643	No protein	-	lncRNA	-	-
ENST00000687815.2	HCG18-274	2633	No protein	-	lncRNA	-	-
ENST00000844432.1	HCG18-299	2617	No protein	-	lncRNA	-	-
ENST00000844441.1	HCG18-308	2565	No protein	-	lncRNA	-	-
ENST00000656629.2	HCG18-255	2545	No protein	-	lncRNA	-	-
ENST00000602698.8	HCG18-249	2339	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000844438.1	HCG18-305	2332	No protein	-	lncRNA	-	-
ENST00000844430.1	HCG18-297	2296	No protein	-	lncRNA	-	-
ENST00000691282.2	HCG18-275	2281	No protein	-	lncRNA	-	-
ENST00000602591.2	HCG18-248	2271	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000438412.6	HCG18-236	2270	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000454269.8	HCG18-241	2209	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000844445.1	HCG18-312	2199	No protein	-	lncRNA	-	-
ENST00000844434.1	HCG18-301	2187	No protein	-	lncRNA	-	-
ENST00000702209.2	HCG18-276	2119	No protein	-	lncRNA	-	-
ENST00000844451.1	HCG18-318	2118	No protein	-	lncRNA	-	-
ENST00000844429.1	HCG18-296	2044	No protein	-	lncRNA	-	-
ENST00000844443.1	HCG18-310	2016	No protein	-	lncRNA	-	-
ENST00000412685.10	HCG18-233	1993	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000844439.1	HCG18-306	1826	No protein	-	lncRNA	-	-
ENST00000844448.1	HCG18-315	1823	No protein	-	lncRNA	-	-
ENST00000844442.1	HCG18-309	1807	No protein	-	lncRNA	-	-
ENST00000844428.1	HCG18-295	1747	No protein	-	lncRNA	-	-
ENST00000844440.1	HCG18-307	1729	No protein	-	lncRNA	-	-
ENST00000844453.1	HCG18-320	1687	No protein	-	lncRNA	-	-
ENST00000687430.2	HCG18-272	1647	No protein	-	lncRNA	-	-
ENST00000602550.7	HCG18-247	1620	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000844427.1	HCG18-294	1618	No protein	-	lncRNA	-	-
ENST00000844426.1	HCG18-293	1590	No protein	-	lncRNA	-	-
ENST00000844447.1	HCG18-314	1581	No protein	-	lncRNA	-	-
ENST00000844450.1	HCG18-317	1526	No protein	-	lncRNA	-	-
ENST00000844436.1	HCG18-303	1416	No protein	-	lncRNA	-	-
ENST00000844413.1	HCG18-280	1410	No protein	-	lncRNA	-	-
ENST00000844435.1	HCG18-302	1349	No protein	-	lncRNA	-	-
ENST00000844449.1	HCG18-316	1314	No protein	-	lncRNA	-	-
ENST00000844412.1	HCG18-279	1313	No protein	-	lncRNA	-	-
ENST00000844446.1	HCG18-313	1293	No protein	-	lncRNA	-	-
ENST00000844452.1	HCG18-319	1274	No protein	-	lncRNA	-	-
ENST00000844455.1	HCG18-322	1246	No protein	-	lncRNA	-	-
ENST00000844467.1	HCG18-334	1181	No protein	-	lncRNA	-	-
ENST00000844414.1	HCG18-281	1179	No protein	-	lncRNA	-	-
ENST00000844465.1	HCG18-332	1174	No protein	-	lncRNA	-	-
ENST00000844422.1	HCG18-289	1163	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000844425.1	HCG18-292	1119	No protein	-	lncRNA	-	-
ENST00000844460.1	HCG18-327	1113	No protein	-	lncRNA	-	-
ENST00000844468.1	HCG18-335	1104	No protein	-	lncRNA	-	-
ENST00000844464.1	HCG18-331	1101	No protein	-	lncRNA	-	-
ENST00000687471.2	HCG18-273	1092	No protein	-	lncRNA	-	-
ENST00000844423.1	HCG18-290	1090	No protein	-	lncRNA	-	-
ENST00000453558.2	HCG18-239	987	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000844417.1	HCG18-284	976	No protein	-	lncRNA	-	-
ENST00000844457.1	HCG18-324	943	No protein	-	lncRNA	-	-
ENST00000413358.6	HCG18-234	916	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000844474.1	HCG18-341	904	No protein	-	lncRNA	-	-
ENST00000844456.1	HCG18-323	883	No protein	-	lncRNA	-	-
ENST00000844420.1	HCG18-287	858	No protein	-	lncRNA	-	-
ENST00000844463.1	HCG18-330	854	No protein	-	lncRNA	-	-
ENST00000844461.1	HCG18-328	834	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000844458.1	HCG18-325	830	No protein	-	lncRNA	-	-
ENST00000844424.1	HCG18-291	827	No protein	-	lncRNA	-	-
ENST00000844470.1	HCG18-337	797	No protein	-	lncRNA	-	-
ENST00000844459.1	HCG18-326	787	No protein	-	lncRNA	-	-
ENST00000844454.1	HCG18-321	784	No protein	-	lncRNA	-	-
ENST00000844462.1	HCG18-329	781	No protein	-	lncRNA	-	-
ENST00000844475.1	HCG18-342	772	No protein	-	lncRNA	-	-
ENST00000844466.1	HCG18-333	766	No protein	-	lncRNA	-	-
ENST00000844415.1	HCG18-282	762	No protein	-	lncRNA	-	-
ENST00000844419.1	HCG18-286	744	No protein	-	lncRNA	-	-
ENST00000844416.1	HCG18-283	694	No protein	-	lncRNA	-	-
ENST00000844411.1	HCG18-278	681	No protein	-	lncRNA	-	-
ENST00000844421.1	HCG18-288	669	No protein	-	lncRNA	-	-
ENST00000844469.1	HCG18-336	656	No protein	-	lncRNA	-	-
ENST00000844476.1	HCG18-343	611	No protein	-	lncRNA	-	-
ENST00000602498.2	HCG18-245	580	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000844418.1	HCG18-285	484	No protein	-	lncRNA	-	-
ENST00000844471.1	HCG18-338	441	No protein	-	lncRNA	-	-
ENST00000455957.5	HCG18-242	350	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000844473.1	HCG18-340	343	No protein	-	lncRNA	-	-
ENST00000844472.1	HCG18-339	235	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 7,100 bps,

Version

ENST00000668974.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000668974.2 HCG18-267

Summary

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Transcript: ENST00000668974.2 HCG18-267

Summary

About Us

Get help

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