Transcript: ENST00000668292.1 LINC02180-209

Description

long intergenic non-protein coding RNA 2180 [Source:HGNC Symbol;Acc:HGNC:53042]

Location

Chromosome 16: 52,085,270-52,099,120 forward strand.

About this transcript

This transcript has 6 exons and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSG00000261749.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000717481.1	LINC02180-213	1022	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000664235.1	LINC02180-208	1490	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668292.1	LINC02180-209	1479	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659261.1	LINC02180-205	1423	No protein	-	lncRNA	-	-
ENST00000817136.1	LINC02180-218	1350	No protein	-	lncRNA	-	-
ENST00000658449.1	LINC02180-204	1232	No protein	-	lncRNA	-	-
ENST00000670615.1	LINC02180-212	1167	No protein	-	lncRNA	-	-
ENST00000656714.1	LINC02180-203	1154	No protein	-	lncRNA	-	-
ENST00000817134.1	LINC02180-216	1129	No protein	-	lncRNA	-	-
ENST00000660788.1	LINC02180-207	1111	No protein	-	lncRNA	-	-
ENST00000659332.1	LINC02180-206	1106	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000566439.3	LINC02180-201	1083	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000670505.1	LINC02180-211	1004	No protein	-	lncRNA	-	-
ENST00000817132.1	LINC02180-214	932	No protein	-	lncRNA	-	-
ENST00000670037.1	LINC02180-210	930	No protein	-	lncRNA	-	-
ENST00000817135.1	LINC02180-217	883	No protein	-	lncRNA	-	-
ENST00000817133.1	LINC02180-215	830	No protein	-	lncRNA	-	-
ENST00000568711.2	LINC02180-202	736	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000817137.1	LINC02180-219	643	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000817140.1	LINC02180-222	478	No protein	-	lncRNA	-	-
ENST00000817139.1	LINC02180-221	339	No protein	-	lncRNA	-	-
ENST00000817138.1	LINC02180-220	331	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,479 bps,

Version

ENST00000668292.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000668292.1 LINC02180-209

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Transcript: ENST00000668292.1 LINC02180-209

Summary

About Us

Get help

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