Transcript: ENST00000668068.1 LINC00662-267

Description

long intergenic non-protein coding RNA 662 [Source:HGNC Symbol;Acc:HGNC:27122]

Location

Chromosome 19: 27,729,587-27,793,899 reverse strand.

About this transcript

This transcript has 5 exons and maps to 251 oligo probes.

Gene

This transcript is a product of gene ENSG00000261824.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000665996.1	LINC00662-258	1798	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000668933.1	LINC00662-270	6446	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657677.1	LINC00662-231	6226	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659995.1	LINC00662-242	6064	No protein	-	lncRNA	-	-
ENST00000658434.1	LINC00662-233	5212	No protein	-	lncRNA	-	-
ENST00000656191.1	LINC00662-225	4842	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665874.1	LINC00662-257	4506	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661680.3	LINC00662-245	4282	No protein	-	lncRNA	-	-
ENST00000666734.2	LINC00662-262	4009	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654098.1	LINC00662-214	3832	No protein	-	lncRNA	-	-
ENST00000657659.3	LINC00662-230	3524	No protein	-	lncRNA	-	-
ENST00000655465.1	LINC00662-221	3511	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659785.1	LINC00662-240	3141	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666841.1	LINC00662-263	3115	No protein	-	lncRNA	-	-
ENST00000663775.1	LINC00662-249	3111	No protein	-	lncRNA	-	-
ENST00000668513.1	LINC00662-268	3064	No protein	-	lncRNA	-	-
ENST00000670572.1	LINC00662-273	2917	No protein	-	lncRNA	-	-
ENST00000662487.1	LINC00662-247	2901	No protein	-	lncRNA	-	-
ENST00000666658.1	LINC00662-261	2889	No protein	-	lncRNA	-	-
ENST00000561521.2	LINC00662-201	2786	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000656170.1	LINC00662-224	2643	No protein	-	lncRNA	-	-
ENST00000654443.1	LINC00662-216	2614	No protein	-	lncRNA	-	-
ENST00000662444.1	LINC00662-246	2590	No protein	-	lncRNA	-	-
ENST00000667678.1	LINC00662-266	2560	No protein	-	lncRNA	-	-
ENST00000653459.1	LINC00662-212	2505	No protein	-	lncRNA	-	-
ENST00000663492.1	LINC00662-248	2317	No protein	-	lncRNA	-	-
ENST00000586954.1	LINC00662-203	2254	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000664383.1	LINC00662-251	2240	No protein	-	lncRNA	-	-
ENST00000659422.1	LINC00662-238	2229	No protein	-	lncRNA	-	-
ENST00000664444.1	LINC00662-252	2222	No protein	-	lncRNA	-	-
ENST00000664720.1	LINC00662-254	2083	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000590523.2	LINC00662-206	1999	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000656086.1	LINC00662-223	1944	No protein	-	lncRNA	-	-
ENST00000670305.2	LINC00662-272	1935	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671282.1	LINC00662-277	1933	No protein	-	lncRNA	-	-
ENST00000749065.1	LINC00662-288	1914	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657730.1	LINC00662-232	1908	No protein	-	lncRNA	-	-
ENST00000655567.1	LINC00662-222	1832	No protein	-	lncRNA	-	-
ENST00000654151.1	LINC00662-215	1817	No protein	-	lncRNA	-	-
ENST00000660418.1	LINC00662-243	1796	No protein	-	lncRNA	-	-
ENST00000690384.1	LINC00662-280	1772	No protein	-	lncRNA	-	-
ENST00000666003.1	LINC00662-259	1742	No protein	-	lncRNA	-	-
ENST00000658654.1	LINC00662-234	1685	No protein	-	lncRNA	-	-
ENST00000653404.1	LINC00662-211	1637	No protein	-	lncRNA	-	-
ENST00000659734.1	LINC00662-239	1625	No protein	-	lncRNA	-	-
ENST00000653471.1	LINC00662-213	1551	No protein	-	lncRNA	-	-
ENST00000749060.1	LINC00662-283	1515	No protein	-	lncRNA	-	-
ENST00000659364.1	LINC00662-237	1514	No protein	-	lncRNA	-	-
ENST00000668068.1	LINC00662-267	1482	No protein	-	lncRNA	-	-
ENST00000690193.1	LINC00662-279	1469	No protein	-	lncRNA	-	-
ENST00000665102.1	LINC00662-256	1463	No protein	-	lncRNA	-	-
ENST00000586248.6	LINC00662-202	1410	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000659922.1	LINC00662-241	1410	No protein	-	lncRNA	-	-
ENST00000667518.1	LINC00662-265	1352	No protein	-	lncRNA	-	-
ENST00000670973.1	LINC00662-274	1350	No protein	-	lncRNA	-	-
ENST00000668560.1	LINC00662-269	1349	No protein	-	lncRNA	-	-
ENST00000656728.1	LINC00662-229	1348	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000749061.1	LINC00662-284	1346	No protein	-	lncRNA	-	-
ENST00000654892.1	LINC00662-218	1339	No protein	-	lncRNA	-	-
ENST00000671152.1	LINC00662-275	1323	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664688.1	LINC00662-253	1321	No protein	-	lncRNA	-	-
ENST00000654565.1	LINC00662-217	1310	No protein	-	lncRNA	-	-
ENST00000656221.1	LINC00662-226	1302	No protein	-	lncRNA	-	-
ENST00000669191.1	LINC00662-271	1301	No protein	-	lncRNA	-	-
ENST00000656647.1	LINC00662-227	1295	No protein	-	lncRNA	-	-
ENST00000658694.1	LINC00662-235	1267	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000590677.6	LINC00662-207	1227	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000666409.1	LINC00662-260	1222	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655166.3	LINC00662-220	1218	No protein	-	lncRNA	-	-
ENST00000655066.1	LINC00662-219	1193	No protein	-	lncRNA	-	-
ENST00000749062.1	LINC00662-285	1186	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658794.1	LINC00662-236	1164	No protein	-	lncRNA	-	-
ENST00000671227.1	LINC00662-276	1122	No protein	-	lncRNA	-	-
ENST00000667396.1	LINC00662-264	1110	No protein	-	lncRNA	-	-
ENST00000749067.1	LINC00662-290	1108	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000749058.1	LINC00662-281	1091	No protein	-	lncRNA	-	-
ENST00000656708.1	LINC00662-228	1088	No protein	-	lncRNA	-	-
ENST00000749064.1	LINC00662-287	1088	No protein	-	lncRNA	-	-
ENST00000660820.1	LINC00662-244	1081	No protein	-	lncRNA	-	-
ENST00000749070.1	LINC00662-293	1080	No protein	-	lncRNA	-	-
ENST00000664204.1	LINC00662-250	1022	No protein	-	lncRNA	-	-
ENST00000664921.1	LINC00662-255	988	No protein	-	lncRNA	-	-
ENST00000749059.1	LINC00662-282	966	No protein	-	lncRNA	-	-
ENST00000687807.3	LINC00662-278	943	No protein	-	lncRNA	-	-
ENST00000653317.1	LINC00662-210	921	No protein	-	lncRNA	-	-
ENST00000749066.1	LINC00662-289	725	No protein	-	lncRNA	-	-
ENST00000591338.2	LINC00662-208	702	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000749068.1	LINC00662-291	659	No protein	-	lncRNA	-	-
ENST00000591458.1	LINC00662-209	578	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000588027.5	LINC00662-204	562	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000588150.5	LINC00662-205	493	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000749063.1	LINC00662-286	437	No protein	-	lncRNA	-	-
ENST00000749069.1	LINC00662-292	424	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,482 bps,

Version

ENST00000668068.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000668068.1 LINC00662-267

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Transcript: ENST00000668068.1 LINC00662-267

Summary

About Us

Get help

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