Transcript: ENST00000667748.1 LINC01501-213

Description

long intergenic non-protein coding RNA 1501 [Source:HGNC Symbol;Acc:HGNC:27988]

Location

Chromosome 9: 90,501,366-90,509,260 reverse strand.

About this transcript

This transcript has 3 exons and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSG00000229613.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000785747.1	LINC01501-217	1336	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000703259.1	LINC01501-216	3062	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000449990.3	LINC01501-203	2020	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000668156.2	LINC01501-214	2003	No protein	-	lncRNA	-	-
ENST00000785751.1	LINC01501-221	1870	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665289.1	LINC01501-208	1821	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000785750.1	LINC01501-220	1620	No protein	-	lncRNA	-	-
ENST00000665506.1	LINC01501-209	1605	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664603.1	LINC01501-207	1483	No protein	-	lncRNA	-	-
ENST00000656691.1	LINC01501-205	1385	No protein	-	lncRNA	-	-
ENST00000666877.1	LINC01501-212	1286	No protein	-	lncRNA	-	-
ENST00000658201.1	LINC01501-206	1272	No protein	-	lncRNA	-	-
ENST00000668348.1	LINC01501-215	1063	No protein	-	lncRNA	-	-
ENST00000785752.1	LINC01501-222	1023	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000785748.1	LINC01501-218	992	No protein	-	lncRNA	-	-
ENST00000667748.1	LINC01501-213	964	No protein	-	lncRNA	-	-
ENST00000655942.1	LINC01501-204	901	No protein	-	lncRNA	-	-
ENST00000665733.1	LINC01501-210	837	No protein	-	lncRNA	-	-
ENST00000785758.1	LINC01501-228	710	No protein	-	lncRNA	-	-
ENST00000785757.1	LINC01501-227	640	No protein	-	lncRNA	-	-
ENST00000785756.1	LINC01501-226	633	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000785755.1	LINC01501-225	595	No protein	-	lncRNA	-	-
ENST00000785759.1	LINC01501-229	572	No protein	-	lncRNA	-	-
ENST00000666177.1	LINC01501-211	558	No protein	-	lncRNA	-	-
ENST00000785749.1	LINC01501-219	532	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427523.1	LINC01501-201	409	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000785753.1	LINC01501-223	378	No protein	-	lncRNA	-	-
ENST00000785754.1	LINC01501-224	357	No protein	-	lncRNA	-	-
ENST00000429044.2	LINC01501-202	355	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 964 bps,

Version

ENST00000667748.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000667748.1 LINC01501-213

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Transcript: ENST00000667748.1 LINC01501-213

Summary

About Us

Get help

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